Variant report

Variant	rs10829024
Chromosome Location	chr10:26839487-26839488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26623717..26624647-chr10:26839433..26840313,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10764633	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10829019	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10829020	0.91[ASN][1000 genomes]
rs11015154	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015155	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015156	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015160	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015162	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11015163	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11015175	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11597181	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814909	0.88[AFR][1000 genomes]
rs11816179	0.81[AFR][1000 genomes]
rs12354674	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12355051	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12357356	0.91[ASN][1000 genomes]
rs67278705	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7081291	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7096704	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs766676	0.81[AFR][1000 genomes]
rs7899859	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7903201	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7904192	0.83[AFR][1000 genomes]
rs7910019	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910933	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
2	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:26809200-26844000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:26820600-26844600	Weak transcription	Pancreas	Pancrea
6	chr10:26823800-26840000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:26825400-26840800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:26827200-26839600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:26830000-26845000	Strong transcription	Primary hematopoietic stem cells	blood
10	chr10:26831000-26844600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:26832200-26839800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:26832200-26839800	Weak transcription	Lung	lung
13	chr10:26832200-26839800	Weak transcription	Spleen	Spleen
14	chr10:26833600-26839800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:26834000-26839600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:26834200-26839800	Weak transcription	Liver	Liver
17	chr10:26834200-26841200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:26834400-26839600	Weak transcription	Thymus	Thymus
19	chr10:26834800-26858400	Strong transcription	Dnd41	blood
20	chr10:26835400-26841000	ZNF genes & repeats	GM12878-XiMat	blood
21	chr10:26835800-26840600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr10:26836000-26844400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:26836800-26839600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:26837000-26839600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:26837200-26840000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:26837400-26839600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
27	chr10:26837400-26839800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
28	chr10:26837600-26839800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
29	chr10:26837600-26840000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
30	chr10:26837800-26841800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:26837800-26844600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:26838000-26840000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
33	chr10:26838400-26844000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr10:26838800-26839800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:26838800-26840000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:26838800-26840200	ZNF genes & repeats	Adipose Nuclei	Adipose
37	chr10:26839200-26843600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:26839200-26847000	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:26839400-26839800	ZNF genes & repeats	Primary B cells from cord blood	blood
40	chr10:26839400-26844200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:26839400-26844400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:26839400-26844800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:26839400-26854200	Strong transcription	Primary T cells from cord blood	blood

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