Variant report

Variant	rs11814909
Chromosome Location	chr10:26811895-26811896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10829024	0.88[AFR][1000 genomes]
rs11015154	0.93[AFR][1000 genomes]
rs11015155	0.93[AFR][1000 genomes]
rs11015156	0.93[AFR][1000 genomes]
rs11015162	0.84[AFR][1000 genomes]
rs11015163	0.84[AFR][1000 genomes]
rs11015175	0.88[AFR][1000 genomes]
rs11597181	0.88[AFR][1000 genomes]
rs11816179	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12355051	0.88[AFR][1000 genomes]
rs7081291	0.88[AFR][1000 genomes]
rs766676	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7899859	0.81[AFR][1000 genomes]
rs7903201	0.93[AFR][1000 genomes]
rs7904192	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7910019	0.91[AFR][1000 genomes]
rs7910933	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26776600-26820200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:26780200-26834000	Strong transcription	Dnd41	blood
3	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr10:26780800-26827000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:26781000-26814000	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:26792400-26813400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:26792800-26816600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:26792800-26819200	Strong transcription	Primary T cells from cord blood	blood
10	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
11	chr10:26799800-26813400	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:26800000-26812400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr10:26801600-26813400	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:26801800-26819000	Strong transcription	Thymus	Thymus
15	chr10:26802200-26822800	Weak transcription	Spleen	Spleen
16	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:26802400-26818600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:26802400-26824800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:26802800-26815800	Strong transcription	GM12878-XiMat	blood
21	chr10:26804000-26817600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:26806600-26812400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:26807200-26812600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:26809200-26813200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:26809200-26814200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:26809200-26814200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:26809200-26814400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:26809200-26817000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr10:26809200-26826600	Strong transcription	Liver	Liver
30	chr10:26809200-26831800	Weak transcription	Lung	lung
31	chr10:26809200-26834600	Strong transcription	Primary B cells from cord blood	blood
32	chr10:26809200-26844000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:26809400-26827200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:26809400-26828200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:26809600-26812200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:26810200-26812400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:26810600-26812400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:26810600-26814400	Weak transcription	Adipose Nuclei	Adipose
39	chr10:26811200-26812000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr10:26811400-26813600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:26811400-26820800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr10:26811800-26813000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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