Variant report

Variant	rs10829026
Chromosome Location	chr10:26857439-26857440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10829027	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829030	0.93[CEU][hapmap];0.90[ASN][1000 genomes]
rs1775227	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4465284	0.86[ASN][1000 genomes]
rs7084567	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs787015	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv550229	chr10:26848206-26889823	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv971873	chr10:26850516-26870913	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3332234	chr10:26853285-26881775	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3441332	chr10:26854971-26857519	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10829026	PIP4K2A	cis	parietal	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26834800-26858400	Strong transcription	Dnd41	blood
2	chr10:26839600-26860800	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr10:26839800-26861200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:26840000-26860000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:26845400-26863000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr10:26846000-26859600	Strong transcription	Primary B cells from cord blood	blood
8	chr10:26846200-26859000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:26846400-26860800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:26846400-26861600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:26846600-26858200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:26846600-26858400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:26846600-26859600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:26846600-26860800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:26846800-26859400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:26846800-26861200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:26846800-26863000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr10:26848200-26861000	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:26848400-26863000	Strong transcription	Fetal Thymus	thymus
20	chr10:26848800-26857800	Strong transcription	Liver	Liver
21	chr10:26849000-26857600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:26849000-26859000	Strong transcription	GM12878-XiMat	blood
23	chr10:26849000-26860600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:26854000-26860800	Strong transcription	Thymus	Thymus
25	chr10:26854600-26860200	Strong transcription	Primary T cells from cord blood	blood
26	chr10:26855000-26859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:26855400-26860000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:26856000-26857600	Strong transcription	Adipose Nuclei	Adipose
29	chr10:26856200-26857600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
30	chr10:26856200-26857800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr10:26856200-26859400	Strong transcription	Primary hematopoietic stem cells	blood
32	chr10:26856400-26864000	Weak transcription	Pancreas	Pancrea
33	chr10:26856600-26857600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr10:26856600-26859200	Weak transcription	Spleen	Spleen
35	chr10:26856600-26859600	Weak transcription	Lung	lung
36	chr10:26856600-26860200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:26856800-26859800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:26857000-26857800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:26857000-26860400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:26857400-26857800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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