Variant report

Variant	rs787015
Chromosome Location	chr10:26862842-26862843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10829026	0.88[ASN][1000 genomes]
rs10829027	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10829030	0.90[ASN][1000 genomes]
rs1775227	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4465284	0.86[ASN][1000 genomes]
rs7084567	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv550229	chr10:26848206-26889823	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv971873	chr10:26850516-26870913	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3332234	chr10:26853285-26881775	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv466837	chr10:26858860-26866420	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
6	nsv550230	chr10:26858860-26866420	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	esv3400546	chr10:26860715-26947192	Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv3436664	chr10:26860755-26969397	Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv3409599	chr10:26860997-26947298	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv894976	chr10:26861229-26925722	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv3351582	chr10:26861352-26915063	Active TSS Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv3360208	chr10:26861751-26915460	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv3221	chr10:26861964-26915516	Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:26845400-26863000	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:26846800-26863000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:26848400-26863000	Strong transcription	Fetal Thymus	thymus
5	chr10:26856400-26864000	Weak transcription	Pancreas	Pancrea
6	chr10:26857600-26880200	Weak transcription	Adipose Nuclei	Adipose
7	chr10:26858400-26879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:26860800-26863000	Strong transcription	Primary hematopoietic stem cells	blood
9	chr10:26860800-26881200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr10:26860800-26892600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:26861000-26864200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:26861000-26864200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:26861000-26864200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:26861000-26874400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:26861000-26886600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:26861200-26872000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:26861200-26884400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:26861200-26884800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:26862000-26863000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:26862000-26863000	Strong transcription	Thymus	Thymus
21	chr10:26862000-26863200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr10:26862000-26863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:26862000-26863400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:26862000-26863600	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr10:26862000-26864600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:26862000-26864600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr10:26862200-26863000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr10:26862200-26863600	Enhancers	GM12878-XiMat	blood
29	chr10:26862200-26864400	Strong transcription	Primary T cells from cord blood	blood
30	chr10:26862400-26882400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:26862600-26863000	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr10:26862600-26863000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:26862600-26863000	Genic enhancers	Primary B cells from cord blood	blood
34	chr10:26862600-26863000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:26862600-26863000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:26862600-26863000	Strong transcription	Dnd41	blood
37	chr10:26862600-26863200	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr10:26862800-26863000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr10:26862800-26863200	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr10:26862800-26864800	Enhancers	Primary B cells from peripheral blood	blood

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