Variant report

Variant	rs10829147
Chromosome Location	chr10:27252019-27252020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10829143	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829144	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10829145	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11015389	0.83[ASN][1000 genomes]
rs11015394	0.83[ASN][1000 genomes]
rs11015397	0.83[ASN][1000 genomes]
rs11015398	0.89[ASN][1000 genomes]
rs11015402	0.81[MKK][hapmap]
rs11015403	0.81[MKK][hapmap]
rs11015408	0.89[ASN][1000 genomes]
rs11015417	0.91[ASN][1000 genomes]
rs11015418	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015419	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015420	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015423	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015430	0.93[ASN][1000 genomes]
rs11015431	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015432	0.93[ASN][1000 genomes]
rs11015434	0.93[ASN][1000 genomes]
rs12218581	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12219637	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12220671	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12359444	0.91[EUR][1000 genomes]
rs12412861	0.93[ASN][1000 genomes]
rs12413543	0.80[ASN][1000 genomes]
rs12572726	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12572741	0.89[ASN][1000 genomes]
rs12573020	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12573785	0.89[ASN][1000 genomes]
rs12775377	0.93[ASN][1000 genomes]
rs12783077	0.93[ASN][1000 genomes]
rs2211443	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488585	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs28417098	0.89[ASN][1000 genomes]
rs34163327	0.89[ASN][1000 genomes]
rs34416280	0.85[ASN][1000 genomes]
rs34694994	0.89[ASN][1000 genomes]
rs34974756	0.89[ASN][1000 genomes]
rs35213008	0.93[ASN][1000 genomes]
rs35606227	0.93[ASN][1000 genomes]
rs35945396	0.93[ASN][1000 genomes]
rs3928123	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs41279934	0.89[ASN][1000 genomes]
rs41279936	0.89[ASN][1000 genomes]
rs41279938	0.89[ASN][1000 genomes]
rs4306204	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747579	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749199	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4749200	0.84[ASN][1000 genomes]
rs4749201	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4749203	0.89[ASN][1000 genomes]
rs4749204	0.89[ASN][1000 genomes]
rs4749205	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4749206	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4749207	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4749208	0.89[ASN][1000 genomes]
rs4749209	0.92[ASN][1000 genomes]
rs4749210	0.93[ASN][1000 genomes]
rs4749211	0.91[EUR][1000 genomes]
rs58651764	0.89[ASN][1000 genomes]
rs60658625	0.89[ASN][1000 genomes]
rs66462820	0.89[ASN][1000 genomes]
rs67387186	0.89[ASN][1000 genomes]
rs7095051	0.91[EUR][1000 genomes]
rs71483822	0.92[ASN][1000 genomes]
rs72629751	0.89[ASN][1000 genomes]
rs7475282	0.89[ASN][1000 genomes]
rs787720	0.83[EUR][1000 genomes]
rs787724	0.85[EUR][1000 genomes]
rs812014	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9334069	0.84[AMR][1000 genomes]
rs9703520	0.91[EUR][1000 genomes]
rs9787430	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9787434	0.89[ASN][1000 genomes]
rs9787668	0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10829147	LINC00202-1	cis	Muscle Skeletal	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27241200-27257400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:27243000-27294800	Weak transcription	Liver	Liver
3	chr10:27244400-27257200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:27244800-27271800	Weak transcription	Pancreas	Pancrea
5	chr10:27245600-27255000	Weak transcription	Left Ventricle	heart
6	chr10:27245600-27267800	Weak transcription	Fetal Intestine Small	intestine
7	chr10:27245600-27270200	Weak transcription	Ovary	ovary
8	chr10:27246000-27269200	Weak transcription	Adipose Nuclei	Adipose
9	chr10:27246600-27273000	Weak transcription	Fetal Stomach	stomach
10	chr10:27247600-27258000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:27247600-27269200	Weak transcription	Spleen	Spleen
12	chr10:27247800-27269200	Weak transcription	Lung	lung
13	chr10:27249600-27268600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:27249800-27258000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:27249800-27258000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:27249800-27271400	Weak transcription	Right Ventricle	heart
17	chr10:27251000-27254800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:27251000-27255400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:27251600-27253600	Strong transcription	Primary T cells from cord blood	blood
20	chr10:27251600-27257200	Weak transcription	Brain Angular Gyrus	brain
21	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
22	chr10:27251800-27265600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:27252000-27260200	Weak transcription	Psoas Muscle	Psoas

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