Variant report

Variant	rs7095051
Chromosome Location	chr10:27243489-27243490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10829143	0.89[EUR][1000 genomes]
rs10829144	0.89[EUR][1000 genomes]
rs10829145	0.88[EUR][1000 genomes]
rs10829147	0.91[EUR][1000 genomes]
rs11015418	0.91[EUR][1000 genomes]
rs11015419	0.91[EUR][1000 genomes]
rs11015420	0.90[EUR][1000 genomes]
rs11015423	0.91[EUR][1000 genomes]
rs11015431	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12359444	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2211443	0.91[EUR][1000 genomes]
rs2488585	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2765421	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4306204	0.91[EUR][1000 genomes]
rs4747579	0.89[EUR][1000 genomes]
rs4749199	1.00[CEU][hapmap]
rs4749206	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4749211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs787720	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs787722	0.82[ASN][1000 genomes]
rs787724	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7896781	0.89[ASN][1000 genomes]
rs812014	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9703520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036722	chr10:27225904-27243972	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1043456	chr10:27225904-27246821	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv947785	chr10:27240343-27246633	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7095051	LINC00202-1	cis	Muscle Skeletal	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27241200-27257400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:27241400-27244600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:27242800-27249200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:27243000-27294800	Weak transcription	Liver	Liver
5	chr10:27243200-27243600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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