Variant report

Variant	rs11015431
Chromosome Location	chr10:27254715-27254716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27252249..27255094-chr10:27256510..27259627,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10829143	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10829144	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829145	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829147	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015418	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015419	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015420	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015423	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12359444	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2211443	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2488585	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4306204	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4747579	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4749206	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4749211	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7095051	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs787720	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787724	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7896781	0.84[ASN][1000 genomes]
rs812014	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9703520	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11015431	LINC00202-1	cis	Muscle Skeletal	GTEx

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27241200-27257400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:27243000-27294800	Weak transcription	Liver	Liver
3	chr10:27244400-27257200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:27244800-27271800	Weak transcription	Pancreas	Pancrea
5	chr10:27245600-27255000	Weak transcription	Left Ventricle	heart
6	chr10:27245600-27267800	Weak transcription	Fetal Intestine Small	intestine
7	chr10:27245600-27270200	Weak transcription	Ovary	ovary
8	chr10:27246000-27269200	Weak transcription	Adipose Nuclei	Adipose
9	chr10:27246600-27273000	Weak transcription	Fetal Stomach	stomach
10	chr10:27247600-27258000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:27247600-27269200	Weak transcription	Spleen	Spleen
12	chr10:27247800-27269200	Weak transcription	Lung	lung
13	chr10:27249600-27268600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:27249800-27258000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:27249800-27258000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:27249800-27271400	Weak transcription	Right Ventricle	heart
17	chr10:27251000-27254800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:27251000-27255400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:27251600-27257200	Weak transcription	Brain Angular Gyrus	brain
20	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
21	chr10:27251800-27265600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:27252000-27260200	Weak transcription	Psoas Muscle	Psoas
23	chr10:27253400-27255000	Weak transcription	Brain Anterior Caudate	brain
24	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr10:27253600-27264800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr10:27253600-27269000	Weak transcription	Primary T cells from cord blood	blood
27	chr10:27254000-27271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:27254400-27258200	Weak transcription	Brain Cingulate Gyrus	brain

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