Variant report

Variant	rs11015420
Chromosome Location	chr10:27244130-27244131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10829143	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829144	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829145	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829147	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015389	0.84[ASN][1000 genomes]
rs11015393	0.80[ASN][1000 genomes]
rs11015394	0.85[ASN][1000 genomes]
rs11015397	0.85[ASN][1000 genomes]
rs11015398	0.91[ASN][1000 genomes]
rs11015408	0.91[ASN][1000 genomes]
rs11015417	0.92[ASN][1000 genomes]
rs11015418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015430	0.92[ASN][1000 genomes]
rs11015431	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015432	0.92[ASN][1000 genomes]
rs11015434	0.92[ASN][1000 genomes]
rs12218581	0.87[ASN][1000 genomes]
rs12219637	0.87[ASN][1000 genomes]
rs12220671	0.87[ASN][1000 genomes]
rs12359444	0.90[EUR][1000 genomes]
rs12412861	0.92[ASN][1000 genomes]
rs12572726	0.89[ASN][1000 genomes]
rs12572741	0.90[ASN][1000 genomes]
rs12573020	0.91[ASN][1000 genomes]
rs12573785	0.91[ASN][1000 genomes]
rs12775377	0.92[ASN][1000 genomes]
rs12783077	0.92[ASN][1000 genomes]
rs2211443	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2488585	0.82[EUR][1000 genomes]
rs28417098	0.91[ASN][1000 genomes]
rs34163327	0.91[ASN][1000 genomes]
rs34416280	0.87[ASN][1000 genomes]
rs34694994	0.91[ASN][1000 genomes]
rs34974756	0.91[ASN][1000 genomes]
rs35213008	0.92[ASN][1000 genomes]
rs35606227	0.92[ASN][1000 genomes]
rs35945396	0.92[ASN][1000 genomes]
rs3928123	0.91[ASN][1000 genomes]
rs41279934	0.91[ASN][1000 genomes]
rs41279936	0.91[ASN][1000 genomes]
rs41279938	0.91[ASN][1000 genomes]
rs4306204	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4747579	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749199	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4749200	0.85[ASN][1000 genomes]
rs4749201	0.87[ASN][1000 genomes]
rs4749203	0.91[ASN][1000 genomes]
rs4749204	0.91[ASN][1000 genomes]
rs4749205	0.91[ASN][1000 genomes]
rs4749206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4749207	0.91[ASN][1000 genomes]
rs4749208	0.91[ASN][1000 genomes]
rs4749209	0.93[ASN][1000 genomes]
rs4749210	0.92[ASN][1000 genomes]
rs4749211	0.90[EUR][1000 genomes]
rs58651764	0.90[ASN][1000 genomes]
rs60658625	0.91[ASN][1000 genomes]
rs66462820	0.91[ASN][1000 genomes]
rs67387186	0.90[ASN][1000 genomes]
rs7095051	0.90[EUR][1000 genomes]
rs71483822	0.93[ASN][1000 genomes]
rs72629751	0.91[ASN][1000 genomes]
rs7475282	0.91[ASN][1000 genomes]
rs787720	0.82[EUR][1000 genomes]
rs787724	0.84[EUR][1000 genomes]
rs812014	0.82[EUR][1000 genomes]
rs9334069	0.86[AMR][1000 genomes]
rs9703520	0.90[EUR][1000 genomes]
rs9787430	0.91[ASN][1000 genomes]
rs9787434	0.91[ASN][1000 genomes]
rs9787668	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043456	chr10:27225904-27246821	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947785	chr10:27240343-27246633	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11015420	LINC00202-1	cis	Muscle Skeletal	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27241200-27257400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:27241400-27244600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:27242800-27249200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:27243000-27294800	Weak transcription	Liver	Liver

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