Variant report

Variant	rs10830952
Chromosome Location	chr11:92603297-92603298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10765565	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10765566	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765567	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765568	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020072	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020079	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020080	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020082	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12789219	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12789841	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34321934	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34508481	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3847540	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847541	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847544	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7101614	0.94[EUR][1000 genomes]
rs7118363	0.94[EUR][1000 genomes]
rs7939598	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043861	chr11:92357570-92689868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92586800-92615800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:92587400-92615800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:92590400-92615800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:92593800-92615400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:92594400-92605400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:92597400-92606000	Strong transcription	Fetal Lung	lung
7	chr11:92597800-92605600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:92598000-92604000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:92598800-92607400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:92599000-92607000	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:92599000-92615800	Weak transcription	Fetal Stomach	stomach
12	chr11:92599200-92611000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:92599200-92616200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:92600600-92615800	Weak transcription	Fetal Brain Female	brain
15	chr11:92600800-92615800	Weak transcription	Aorta	Aorta
16	chr11:92601400-92604000	Enhancers	Colon Smooth Muscle	Colon
17	chr11:92601400-92606200	Weak transcription	Fetal Brain Male	brain
18	chr11:92601800-92623800	Weak transcription	Brain Anterior Caudate	brain
19	chr11:92602000-92603600	Weak transcription	HMEC	breast
20	chr11:92602000-92612400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:92602400-92603600	Enhancers	Fetal Thymus	thymus
22	chr11:92602400-92605800	Enhancers	Fetal Heart	heart
23	chr11:92602600-92603600	Enhancers	HepG2	liver
24	chr11:92602800-92603400	Enhancers	Dnd41	blood
25	chr11:92602800-92604200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:92603000-92603400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:92603000-92603800	Enhancers	Thymus	Thymus
28	chr11:92603200-92604000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:92603200-92604000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:92603200-92604000	Enhancers	NH-A	brain
31	chr11:92603200-92604000	Enhancers	Osteobl	bone

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