Variant report

Variant	rs11020082
Chromosome Location	chr11:92582340-92582341
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10765565	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10765566	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765567	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765568	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10830952	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020072	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020079	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020080	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789219	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12789841	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34321934	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34508481	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3847540	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847541	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847544	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101614	0.89[EUR][1000 genomes]
rs7118363	0.89[EUR][1000 genomes]
rs7939598	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043861	chr11:92357570-92689868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92572800-92584400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:92573600-92586400	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:92574400-92586000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:92577800-92589600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:92577800-92592000	Weak transcription	Aorta	Aorta
6	chr11:92578000-92586200	Weak transcription	Lung	lung
7	chr11:92578000-92590200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:92578200-92587400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:92578200-92592000	Weak transcription	Brain Anterior Caudate	brain
10	chr11:92578200-92598600	Weak transcription	Fetal Brain Male	brain
11	chr11:92578600-92582600	Weak transcription	Brain Angular Gyrus	brain
12	chr11:92578600-92586200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:92578600-92592200	Weak transcription	Fetal Brain Female	brain
14	chr11:92578800-92584800	Weak transcription	Fetal Kidney	kidney
15	chr11:92578800-92586200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:92579000-92586200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:92579000-92586200	Weak transcription	Fetal Lung	lung
18	chr11:92579400-92583000	Weak transcription	Fetal Thymus	thymus
19	chr11:92579800-92583800	Weak transcription	Fetal Stomach	stomach
20	chr11:92579800-92585400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:92579800-92585800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:92579800-92588400	Weak transcription	NHLF	lung
23	chr11:92579800-92592600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:92580000-92585800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:92580200-92585600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:92580400-92585200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:92580600-92583000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:92581000-92583400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:92581000-92586200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:92581200-92583200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:92581400-92586000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:92581800-92583800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:92582000-92582600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:92582000-92582800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr11:92582000-92586200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:92582000-92586400	Weak transcription	Colonic Mucosa	Colon
37	chr11:92582200-92582400	Enhancers	HMEC	breast
38	chr11:92582200-92582800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:92582200-92585400	Weak transcription	NHEK	skin

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