Variant report

Variant	rs11020079
Chromosome Location	chr11:92578169-92578170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10765565	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10765566	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765567	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765568	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10830952	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020072	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020080	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020082	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789219	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12789841	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34321934	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34508481	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3847540	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847541	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847544	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101614	0.83[EUR][1000 genomes]
rs7118363	0.83[EUR][1000 genomes]
rs7939598	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043861	chr11:92357570-92689868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92562600-92578600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:92562800-92579000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:92569000-92579000	Strong transcription	Fetal Lung	lung
4	chr11:92571200-92579000	Weak transcription	Fetal Thymus	thymus
5	chr11:92571800-92578400	Weak transcription	Brain Substantia Nigra	brain
6	chr11:92572400-92582000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:92572600-92580800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:92572800-92578400	Weak transcription	Fetal Kidney	kidney
9	chr11:92572800-92584400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:92573000-92578400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:92573000-92578600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:92573400-92578600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:92573600-92586400	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:92574000-92578800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:92574200-92578400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:92574400-92578200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:92574400-92579200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:92574400-92586000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:92574600-92578600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:92574800-92580000	Enhancers	NHEK	skin
21	chr11:92574800-92580200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:92575000-92581400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr11:92575200-92578200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:92575200-92579800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:92575200-92580000	Enhancers	HMEC	breast
26	chr11:92575400-92579600	Weak transcription	NH-A	brain
27	chr11:92575800-92578400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:92576000-92578600	Strong transcription	Fetal Brain Female	brain
29	chr11:92576200-92578600	Weak transcription	Fetal Intestine Small	intestine
30	chr11:92576200-92580000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:92576400-92579800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:92576400-92579800	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr11:92577000-92578800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:92577200-92579000	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr11:92577200-92579800	Enhancers	Colonic Mucosa	Colon
36	chr11:92577200-92580600	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr11:92577400-92578200	Strong transcription	Brain Anterior Caudate	brain
38	chr11:92577400-92578600	Strong transcription	Brain Angular Gyrus	brain
39	chr11:92577600-92578200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:92577600-92578200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:92577800-92578200	ZNF genes & repeats	Fetal Brain Male	brain
42	chr11:92577800-92589600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:92577800-92592000	Weak transcription	Aorta	Aorta
44	chr11:92578000-92578200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:92578000-92578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:92578000-92578600	Genic enhancers	Fetal Stomach	stomach
47	chr11:92578000-92579400	Enhancers	Fetal Muscle Leg	muscle
48	chr11:92578000-92580800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:92578000-92586200	Weak transcription	Lung	lung
50	chr11:92578000-92590200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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