Variant report

Variant	rs10831005
Chromosome Location	chr11:92918587-92918588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1062050	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10765588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765592	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10830991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10830994	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020179	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020181	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574282	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576495	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399640	0.84[AMR][1000 genomes]
rs4267030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61920510	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61920515	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110187	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112173	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs7114913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939448	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7940438	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7941228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv898178	chr11:92881933-92949447	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv818858	chr11:92898342-92932229	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	esv2757465	chr11:92898342-92934137	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	esv2759853	chr11:92898342-92934137	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	esv2829957	chr11:92915544-92932229	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92891600-92925400	Weak transcription	Fetal Heart	heart
2	chr11:92891800-92929800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:92895400-92920000	Weak transcription	Psoas Muscle	Psoas
4	chr11:92895400-92921400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:92898200-92919800	Weak transcription	Brain Angular Gyrus	brain
6	chr11:92898200-92920000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:92900600-92929600	Weak transcription	HUVEC	blood vessel
8	chr11:92910800-92918600	Weak transcription	Fetal Kidney	kidney
9	chr11:92911200-92930000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:92911400-92919000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:92911400-92919200	Weak transcription	Fetal Intestine Small	intestine
12	chr11:92911400-92925400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:92911600-92918800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:92911600-92919600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:92911600-92920000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:92911600-92920000	Weak transcription	HMEC	breast
17	chr11:92911600-92920000	Weak transcription	HSMMtube	muscle
18	chr11:92911600-92920800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:92911600-92925400	Weak transcription	Esophagus	oesophagus
20	chr11:92911600-92925400	Weak transcription	Gastric	stomach
21	chr11:92911600-92929800	Weak transcription	Right Ventricle	heart
22	chr11:92911600-92930000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:92911800-92920000	Weak transcription	Placenta	Placenta
24	chr11:92911800-92929800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:92911800-92930200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:92912200-92920200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:92912200-92920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:92912200-92929800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:92912200-92929800	Weak transcription	Thymus	Thymus
30	chr11:92912200-92930000	Weak transcription	Fetal Stomach	stomach
31	chr11:92912400-92919000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:92912400-92919000	Weak transcription	Brain Anterior Caudate	brain
33	chr11:92912400-92920200	Weak transcription	HepG2	liver
34	chr11:92912400-92920600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:92912400-92929800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:92912400-92930000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:92912600-92918800	Strong transcription	Primary hematopoietic stem cells	blood
38	chr11:92912600-92919200	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:92912600-92919800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:92912600-92919800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:92912600-92920600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:92912600-92920800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:92912600-92920800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:92912600-92920800	Weak transcription	Left Ventricle	heart
45	chr11:92912600-92921000	Weak transcription	Ovary	ovary
46	chr11:92912600-92923000	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:92912600-92924000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:92912600-92926800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:92912600-92928000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:92912800-92919000	Strong transcription	Monocytes-CD14+_RO01746	blood

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