Variant report
| Variant | rs2399640 |
|---|---|
| Chromosome Location | chr11:92999037-92999038 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1062050 | 0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs10765588 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs10765592 | 0.81[AMR][1000 genomes] |
| rs10765594 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs10830991 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs10830994 | 0.84[AMR][1000 genomes] |
| rs10831003 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs10831005 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs11020179 | 0.84[AMR][1000 genomes] |
| rs11020181 | 0.84[AMR][1000 genomes] |
| rs11020182 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs1158347 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs12574282 | 0.84[AMR][1000 genomes] |
| rs1508607 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs4267030 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs61920510 | 0.84[AMR][1000 genomes] |
| rs61920515 | 0.84[AMR][1000 genomes] |
| rs7110187 | 0.84[AMR][1000 genomes] |
| rs7112173 | 0.83[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7114913 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes] |
| rs7939448 | 0.83[AMR][1000 genomes] |
| rs7940438 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7941228 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039134 | chr11:92790000-93219942 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:92994400-93000800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
