Variant report

Variant	rs7112173
Chromosome Location	chr11:92972584-92972585
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1062050	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs10765588	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[AMR][1000 genomes]
rs10765592	0.82[AMR][1000 genomes]
rs10765594	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs10830991	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs10830994	0.85[AMR][1000 genomes]
rs10831003	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs10831005	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs11020179	0.85[AMR][1000 genomes]
rs11020181	0.85[AMR][1000 genomes]
rs11020182	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs1158347	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[AMR][1000 genomes]
rs12574282	0.85[AMR][1000 genomes]
rs1508607	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs2399640	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4267030	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes]
rs61920510	0.85[AMR][1000 genomes]
rs61920515	0.85[AMR][1000 genomes]
rs7110187	0.85[AMR][1000 genomes]
rs7114913	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes]
rs7939448	0.84[AMR][1000 genomes]
rs7940438	0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7941228	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv436	chr11:92967000-92985674	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv514640	chr11:92967440-92972784	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3464353	chr11:92967896-92972804	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3464331	chr11:92967903-92972689	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3464342	chr11:92967919-92972744	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv826034	chr11:92967982-92972677	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv826035	chr11:92967982-92972713	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3464364	chr11:92968000-92972695	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv498765	chr11:92968001-92972695	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92972000-92972600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links