Variant report

Variant	rs61920515
Chromosome Location	chr11:92914765-92914766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1062050	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10765588	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765592	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765594	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10830991	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10830994	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831005	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020179	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020181	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020182	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158347	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574282	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576495	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508607	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399640	0.84[AMR][1000 genomes]
rs4267030	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61920510	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110187	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112173	0.85[AMR][1000 genomes]
rs7114913	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939448	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7940438	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7941228	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv898178	chr11:92881933-92949447	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047828	chr11:92886648-92915055	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1045544	chr11:92889187-92915055	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1041794	chr11:92893654-92915055	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv818858	chr11:92898342-92932229	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	esv2757465	chr11:92898342-92934137	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
11	esv2759853	chr11:92898342-92934137	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92877800-92915000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr11:92891600-92925400	Weak transcription	Fetal Heart	heart
3	chr11:92891800-92929800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:92895400-92920000	Weak transcription	Psoas Muscle	Psoas
5	chr11:92895400-92921400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:92897800-92917200	Weak transcription	NHDF-Ad	bronchial
7	chr11:92898200-92919800	Weak transcription	Brain Angular Gyrus	brain
8	chr11:92898200-92920000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr11:92900600-92929600	Weak transcription	HUVEC	blood vessel
10	chr11:92910000-92915000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr11:92910800-92918600	Weak transcription	Fetal Kidney	kidney
12	chr11:92911200-92930000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:92911400-92915200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:92911400-92919000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:92911400-92919200	Weak transcription	Fetal Intestine Small	intestine
16	chr11:92911400-92925400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:92911600-92918800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:92911600-92919600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:92911600-92920000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:92911600-92920000	Weak transcription	HMEC	breast
21	chr11:92911600-92920000	Weak transcription	HSMMtube	muscle
22	chr11:92911600-92920800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:92911600-92925400	Weak transcription	Esophagus	oesophagus
24	chr11:92911600-92925400	Weak transcription	Gastric	stomach
25	chr11:92911600-92929800	Weak transcription	Right Ventricle	heart
26	chr11:92911600-92930000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:92911800-92915800	Weak transcription	Fetal Thymus	thymus
28	chr11:92911800-92920000	Weak transcription	Placenta	Placenta
29	chr11:92911800-92929800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:92911800-92930200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:92912000-92915800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:92912200-92920200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:92912200-92920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:92912200-92929800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:92912200-92929800	Weak transcription	Thymus	Thymus
36	chr11:92912200-92930000	Weak transcription	Fetal Stomach	stomach
37	chr11:92912400-92917400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:92912400-92919000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:92912400-92919000	Weak transcription	Brain Anterior Caudate	brain
40	chr11:92912400-92920200	Weak transcription	HepG2	liver
41	chr11:92912400-92920600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:92912400-92929800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:92912400-92930000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:92912600-92915400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:92912600-92915800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:92912600-92916200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:92912600-92917400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:92912600-92918000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:92912600-92918200	Weak transcription	Fetal Brain Male	brain
50	chr11:92912600-92918400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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