Variant report

Variant	rs10831227
Chromosome Location	chr11:94155577-94155578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10741488	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10831222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11020774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11523894	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1257783	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3824878	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4459257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485146	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs489333	0.80[AMR][1000 genomes]
rs491404	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492073	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs514060	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534402	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs538800	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs541090	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs546439	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs554715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs556477	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs560190	0.83[JPT][hapmap]
rs572372	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs581449	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs583534	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs584531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs592943	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs601391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs604845	0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs610611	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs618690	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs646130	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs657830	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs661957	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94135200-94161400	Weak transcription	Placenta	Placenta
2	chr11:94135200-94162200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:94138600-94162200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:94141800-94156600	Weak transcription	Spleen	Spleen
5	chr11:94142400-94161200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:94142800-94156000	Weak transcription	Thymus	Thymus
7	chr11:94143200-94156400	Weak transcription	Fetal Stomach	stomach
8	chr11:94143400-94156400	Weak transcription	Gastric	stomach
9	chr11:94143600-94156400	Weak transcription	Lung	lung
10	chr11:94143800-94156200	Weak transcription	Fetal Intestine Small	intestine
11	chr11:94143800-94156400	Weak transcription	Ovary	ovary
12	chr11:94144200-94169200	Weak transcription	Aorta	Aorta
13	chr11:94145000-94156400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:94145000-94161800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:94145400-94162000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:94146200-94156400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:94146400-94161200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:94146800-94156400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:94146800-94156800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:94146800-94156800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:94146800-94156800	Weak transcription	Fetal Lung	lung
22	chr11:94146800-94157000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:94146800-94160800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:94146800-94161400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:94147000-94156600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:94147200-94156400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:94147200-94156600	Weak transcription	Right Ventricle	heart
28	chr11:94147200-94162200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:94147400-94161000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:94147600-94161000	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:94147600-94162000	Weak transcription	HepG2	liver
32	chr11:94147800-94161400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:94148800-94156000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:94149000-94156200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:94149000-94156800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:94149000-94166600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:94149200-94161000	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:94149400-94156600	Weak transcription	Fetal Brain Female	brain
39	chr11:94149600-94161600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:94149600-94169600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:94150000-94156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:94150000-94161000	Weak transcription	Fetal Brain Male	brain
43	chr11:94150200-94156600	Weak transcription	Esophagus	oesophagus
44	chr11:94150200-94162600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:94150200-94167200	Weak transcription	NH-A	brain
46	chr11:94150600-94161600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr11:94151000-94156400	Weak transcription	Fetal Kidney	kidney
48	chr11:94151000-94157000	Weak transcription	Colonic Mucosa	Colon
49	chr11:94151200-94161000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr11:94151200-94170800	Strong transcription	Primary monocytes fromperipheralblood	blood

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