Variant report

Variant	rs11020774
Chromosome Location	chr11:94149037-94149038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:94148918-94149207	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000263966	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10741488	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10831222	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10831227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11523894	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1257783	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758787	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3824878	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4459257	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485146	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs489333	0.80[AMR][1000 genomes]
rs491404	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492073	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs514060	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516037	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534402	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs538800	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs541090	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs546439	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs554715	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs556477	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs572372	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs581449	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs583534	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs584531	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs592943	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs601391	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs604845	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs610611	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs618690	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs646130	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs657830	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs661957	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94135200-94161400	Weak transcription	Placenta	Placenta
2	chr11:94135200-94162200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:94138600-94162200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:94141200-94155000	Weak transcription	Primary T cells from cord blood	blood
5	chr11:94141800-94156600	Weak transcription	Spleen	Spleen
6	chr11:94142000-94154800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:94142400-94161200	Weak transcription	Brain Anterior Caudate	brain
8	chr11:94142600-94154800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:94142800-94152200	Weak transcription	Liver	Liver
10	chr11:94142800-94156000	Weak transcription	Thymus	Thymus
11	chr11:94143000-94150400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:94143200-94156400	Weak transcription	Fetal Stomach	stomach
13	chr11:94143400-94156400	Weak transcription	Gastric	stomach
14	chr11:94143600-94154800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:94143600-94156400	Weak transcription	Lung	lung
16	chr11:94143800-94151600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr11:94143800-94156200	Weak transcription	Fetal Intestine Small	intestine
18	chr11:94143800-94156400	Weak transcription	Ovary	ovary
19	chr11:94144200-94169200	Weak transcription	Aorta	Aorta
20	chr11:94144400-94153600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:94145000-94156400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:94145000-94161800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:94145200-94152800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:94145400-94154800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:94145400-94162000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:94146200-94156400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:94146400-94161200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:94146600-94152000	Weak transcription	A549	lung
29	chr11:94146600-94153200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:94146600-94154800	Weak transcription	Fetal Thymus	thymus
31	chr11:94146800-94156400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:94146800-94156800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:94146800-94156800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:94146800-94156800	Weak transcription	Fetal Lung	lung
35	chr11:94146800-94157000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:94146800-94160800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:94146800-94161400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:94147000-94154400	Weak transcription	GM12878-XiMat	blood
39	chr11:94147000-94155000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:94147000-94156600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:94147200-94154800	Weak transcription	Left Ventricle	heart
42	chr11:94147200-94156400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:94147200-94156600	Weak transcription	Right Ventricle	heart
44	chr11:94147200-94162200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr11:94147400-94149200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:94147400-94149200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:94147400-94153600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr11:94147400-94161000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:94147600-94153600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:94147600-94154600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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