Variant report

Variant	rs618690
Chromosome Location	chr11:94181890-94181891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94180184..94182302-chr11:94227182..94229296,2	K562	blood:
2	chr11:94181248..94183636-chr11:94224875..94226934,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168876	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10741488	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10831222	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10831227	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020774	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11523894	0.84[EUR][1000 genomes]
rs1257783	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2155209	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758787	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3824878	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4459257	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs485146	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs489333	0.85[AMR][1000 genomes]
rs491404	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs492073	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs514060	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs516037	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs534402	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs538800	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs541090	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs546439	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs554715	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556477	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560190	0.80[AMR][1000 genomes]
rs563882	0.80[AMR][1000 genomes]
rs572372	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs581449	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs583534	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs584531	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs592943	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs601391	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs604845	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610611	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs646130	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs657830	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs661957	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94152200-94206200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:94154400-94183600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr11:94157400-94194200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:94157400-94216600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:94157400-94226200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:94157600-94182200	Weak transcription	Osteobl	bone
7	chr11:94157600-94226400	Weak transcription	Esophagus	oesophagus
8	chr11:94157800-94182200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:94161000-94183000	Strong transcription	Dnd41	blood
10	chr11:94162800-94216400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:94162800-94225800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:94163000-94182400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:94163000-94186000	Weak transcription	Fetal Brain Male	brain
14	chr11:94163000-94192800	Weak transcription	HSMMtube	muscle
15	chr11:94163000-94199200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:94163000-94206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:94163000-94207200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:94163400-94221000	Weak transcription	Psoas Muscle	Psoas
19	chr11:94166600-94216400	Weak transcription	Gastric	stomach
20	chr11:94166800-94202200	Weak transcription	Stomach Mucosa	stomach
21	chr11:94167200-94206000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:94167400-94226400	Weak transcription	Small Intestine	intestine
23	chr11:94167600-94206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:94168600-94182400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:94168800-94191000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:94169800-94199000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:94169800-94215400	Weak transcription	Brain Angular Gyrus	brain
28	chr11:94170000-94182000	Weak transcription	NHDF-Ad	bronchial
29	chr11:94170000-94182200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:94170000-94192600	Weak transcription	Aorta	Aorta
31	chr11:94170000-94192800	Weak transcription	Right Ventricle	heart
32	chr11:94170000-94192800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:94170000-94194200	Weak transcription	Spleen	Spleen
34	chr11:94170200-94192400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:94170400-94192200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:94171200-94183000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:94172200-94190200	Weak transcription	K562	blood
38	chr11:94172400-94183200	Strong transcription	Primary T cells from cord blood	blood
39	chr11:94172800-94183000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:94172800-94183200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:94175600-94182800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr11:94175600-94183000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr11:94175600-94183200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr11:94175800-94183000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:94176800-94182400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:94177200-94182600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:94177800-94192600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr11:94178000-94182400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:94178400-94192800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:94178400-94221600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links