Variant report

Variant	rs11523894
Chromosome Location	chr11:94123324-94123325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10741488	0.86[EUR][1000 genomes]
rs10831222	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10831227	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11020774	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1257783	0.85[EUR][1000 genomes]
rs2155209	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3758787	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3824878	0.85[EUR][1000 genomes]
rs4459257	0.85[EUR][1000 genomes]
rs485146	0.85[EUR][1000 genomes]
rs491404	0.85[EUR][1000 genomes]
rs492073	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs514060	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs516037	0.85[EUR][1000 genomes]
rs534402	0.83[EUR][1000 genomes]
rs541090	0.85[EUR][1000 genomes]
rs546439	0.85[EUR][1000 genomes]
rs554715	0.84[EUR][1000 genomes]
rs556477	0.84[EUR][1000 genomes]
rs572372	0.85[EUR][1000 genomes]
rs583534	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs584531	0.85[EUR][1000 genomes]
rs592943	0.83[EUR][1000 genomes]
rs601391	0.85[EUR][1000 genomes]
rs604845	0.84[EUR][1000 genomes]
rs610611	0.83[EUR][1000 genomes]
rs618690	0.84[EUR][1000 genomes]
rs61905701	0.80[EUR][1000 genomes]
rs646130	0.84[EUR][1000 genomes]
rs657830	0.85[EUR][1000 genomes]
rs661957	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94119600-94132400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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