Variant report

Variant	rs10832893
Chromosome Location	chr11:18189856-18189857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:18189783-18189983	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
MRGPRX4	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10766458	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832890	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11024502	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11024530	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024531	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024539	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11603777	0.88[ASN][1000 genomes]
rs12285875	0.88[ASN][1000 genomes]
rs1455790	0.82[ASN][1000 genomes]
rs1531104	0.82[ASN][1000 genomes]
rs1531105	0.82[ASN][1000 genomes]
rs1840596	0.82[ASN][1000 genomes]
rs1840597	0.82[ASN][1000 genomes]
rs1840598	0.82[ASN][1000 genomes]
rs1968729	0.82[ASN][1000 genomes]
rs1968730	0.82[ASN][1000 genomes]
rs1968731	0.82[ASN][1000 genomes]
rs1968732	0.82[ASN][1000 genomes]
rs2014694	0.82[ASN][1000 genomes]
rs2078066	0.82[ASN][1000 genomes]
rs2246055	0.82[ASN][1000 genomes]
rs2246395	0.82[ASN][1000 genomes]
rs2403247	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2403248	0.82[ASN][1000 genomes]
rs2445180	0.80[ASN][1000 genomes]
rs2445182	0.82[ASN][1000 genomes]
rs2445186	0.82[ASN][1000 genomes]
rs2445187	0.82[ASN][1000 genomes]
rs2468774	0.81[ASN][1000 genomes]
rs2468851	0.82[ASN][1000 genomes]
rs2468853	0.81[ASN][1000 genomes]
rs2860278	0.82[ASN][1000 genomes]
rs4417246	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	esv11709	chr11:18138662-18200717	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3367251	chr11:18159957-18196082	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv518373	chr11:18164687-18195348	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv16635	chr11:18165268-18194893	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2762898	chr11:18166780-18198880	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1038257	chr11:18169410-18198309	Enhancers Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv971991	chr11:18189697-18200475	Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18189800-18190200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:18189800-18190400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:18189800-18190400	Enhancers	NHEK	skin
4	chr11:18189800-18190600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links