Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRGPRX4-2	chr11:18212110-18212767	NONHSAT018267

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10766458	0.86[ASN][1000 genomes]
rs10832890	0.91[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap]
rs10832893	0.89[ASN][1000 genomes]
rs11024502	0.86[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[ASN][1000 genomes]
rs11024530	0.90[ASN][1000 genomes]
rs11024531	0.89[ASN][1000 genomes]
rs11024539	0.91[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11603777	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12285875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1531104	0.81[CHD][hapmap]
rs1902266	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1968730	0.83[CHD][hapmap]
rs1968732	0.81[CHD][hapmap]
rs2078066	0.81[CHD][hapmap]
rs2198706	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs2403247	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2445146	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs2445148	0.88[ASN][1000 genomes]
rs2445149	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs2445180	0.82[CHB][hapmap]
rs2445205	0.81[CHD][hapmap]
rs2445206	0.81[CHD][hapmap]
rs2468772	0.83[CHD][hapmap]
rs2468774	0.82[CHB][hapmap]
rs2860278	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18211200-18225800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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