Variant report

Variant	rs2445148
Chromosome Location	chr11:18215187-18215188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10832889	0.82[EUR][1000 genomes]
rs11024539	0.82[ASN][1000 genomes]
rs11603777	0.87[ASN][1000 genomes]
rs12285875	0.89[ASN][1000 genomes]
rs1455790	0.84[ASN][1000 genomes]
rs1531104	0.84[ASN][1000 genomes]
rs1531105	0.84[ASN][1000 genomes]
rs1840596	0.84[ASN][1000 genomes]
rs1840597	0.84[ASN][1000 genomes]
rs1840598	0.84[ASN][1000 genomes]
rs1869788	0.83[ASN][1000 genomes]
rs1968729	0.84[ASN][1000 genomes]
rs1968730	0.84[ASN][1000 genomes]
rs1968731	0.84[ASN][1000 genomes]
rs1968732	0.84[ASN][1000 genomes]
rs2014694	0.84[ASN][1000 genomes]
rs2078066	0.84[ASN][1000 genomes]
rs2198706	0.93[ASN][1000 genomes]
rs2246055	0.84[ASN][1000 genomes]
rs2246395	0.84[ASN][1000 genomes]
rs2403248	0.84[ASN][1000 genomes]
rs2445146	0.93[ASN][1000 genomes]
rs2445149	0.93[ASN][1000 genomes]
rs2445180	0.84[ASN][1000 genomes]
rs2445182	0.84[ASN][1000 genomes]
rs2445186	0.84[ASN][1000 genomes]
rs2445187	0.84[ASN][1000 genomes]
rs2468772	0.85[ASN][1000 genomes]
rs2468774	0.84[ASN][1000 genomes]
rs2468851	0.84[ASN][1000 genomes]
rs2468853	0.83[ASN][1000 genomes]
rs2860278	0.84[ASN][1000 genomes]
rs4256954	0.82[EUR][1000 genomes]
rs4300374	0.82[EUR][1000 genomes]
rs4417246	0.88[ASN][1000 genomes]
rs4630269	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18211200-18225800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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