Variant report

Variant	rs2403247
Chromosome Location	chr11:18193840-18193841
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10766458	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832890	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10832893	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024502	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11024530	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024531	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024539	0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11603777	0.88[ASN][1000 genomes]
rs12285875	0.88[ASN][1000 genomes]
rs1378607	0.82[CHB][hapmap]
rs1378608	0.82[CHB][hapmap]
rs1378612	0.82[CHB][hapmap]
rs1455790	0.82[ASN][1000 genomes]
rs1531104	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs1531105	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs1840596	0.82[ASN][1000 genomes]
rs1840597	0.82[ASN][1000 genomes]
rs1840598	0.82[ASN][1000 genomes]
rs1902266	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1968729	0.82[ASN][1000 genomes]
rs1968730	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs1968731	0.82[ASN][1000 genomes]
rs1968732	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs2014694	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs2078066	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs2124375	0.91[CHB][hapmap]
rs2124376	0.92[CHB][hapmap]
rs2124377	0.91[CHB][hapmap]
rs2246055	0.82[ASN][1000 genomes]
rs2246304	0.91[CHB][hapmap]
rs2246305	0.91[CHB][hapmap]
rs2246388	0.91[CHB][hapmap]
rs2246395	0.82[ASN][1000 genomes]
rs2253938	0.82[CHB][hapmap]
rs2403248	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs2445180	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs2445182	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs2445183	0.91[CHB][hapmap]
rs2445186	0.82[ASN][1000 genomes]
rs2445187	0.82[ASN][1000 genomes]
rs2445205	0.91[CHB][hapmap]
rs2445206	0.91[CHB][hapmap]
rs2468772	0.82[CHB][hapmap]
rs2468774	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs2468851	0.82[ASN][1000 genomes]
rs2468853	0.81[ASN][1000 genomes]
rs2860276	0.91[CHB][hapmap]
rs2860278	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs4417246	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	esv11709	chr11:18138662-18200717	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3367251	chr11:18159957-18196082	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv518373	chr11:18164687-18195348	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv16635	chr11:18165268-18194893	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2762898	chr11:18166780-18198880	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1038257	chr11:18169410-18198309	Enhancers Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv971991	chr11:18189697-18200475	Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18193400-18195800	Enhancers	HepG2	liver

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