Variant report

Variant	rs10836262
Chromosome Location	chr11:34623724-34623725
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34622395..34624050-chr11:34625059..34627992,2	K562	blood:
2	chr11:34621491..34624249-chr11:34628284..34630730,3	K562	blood:
3	chr11:34622016..34626475-chr11:34634436..34638216,4	K562	blood:
4	chr11:34620874..34623895-chr11:34625978..34628773,4	K562	blood:
5	chr11:34623436..34625468-chr11:34629882..34632091,2	MCF-7	breast:
6	chr11:34608832..34611723-chr11:34620873..34624079,3	K562	blood:
7	chr11:34621759..34624230-chr11:34829278..34830946,2	K562	blood:
8	chr11:34616542..34620453-chr11:34622551..34624914,3	K562	blood:

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10836263	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836264	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11032780	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16925853	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16925865	0.82[ASN][1000 genomes]
rs16925867	0.81[EUR][1000 genomes]
rs286930	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs286932	0.81[EUR][1000 genomes]
rs286933	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs286937	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs286938	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs286940	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs286941	0.84[ASN][1000 genomes]
rs286943	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs286944	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs286947	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs286948	0.86[ASN][1000 genomes]
rs57308521	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7109197	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34620000-34626600	Enhancers	NHEK	skin
3	chr11:34620400-34624600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:34620600-34624000	Enhancers	Fetal Lung	lung
5	chr11:34620600-34628400	Enhancers	Fetal Intestine Small	intestine
6	chr11:34620600-34628600	Enhancers	Fetal Intestine Large	intestine
7	chr11:34620800-34625800	Enhancers	Pancreas	Pancrea
8	chr11:34621200-34624200	Weak transcription	Gastric	stomach
9	chr11:34621800-34626600	Weak transcription	Small Intestine	intestine
10	chr11:34622200-34624400	Enhancers	K562	blood
11	chr11:34622600-34626000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:34622600-34626600	Weak transcription	HMEC	breast
13	chr11:34622800-34624000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:34622800-34627200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:34623000-34624800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:34623000-34625600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:34623000-34627000	Enhancers	Stomach Mucosa	stomach
18	chr11:34623000-34627200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:34623000-34627600	Weak transcription	Esophagus	oesophagus
20	chr11:34623000-34628000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:34623200-34624000	Weak transcription	Lung	lung
22	chr11:34623200-34624400	Enhancers	Duodenum Mucosa	Duodenum
23	chr11:34623200-34625200	Weak transcription	Placenta	Placenta
24	chr11:34623200-34626600	Weak transcription	HSMMtube	muscle
25	chr11:34623200-34627200	Weak transcription	NHLF	lung
26	chr11:34623400-34624200	Weak transcription	Colonic Mucosa	Colon
27	chr11:34623400-34624200	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr11:34623400-34624200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr11:34623400-34624600	Weak transcription	Hela-S3	cervix
30	chr11:34623400-34628600	Enhancers	A549	lung
31	chr11:34623400-34628600	Enhancers	HepG2	liver
32	chr11:34623400-34631200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links