Variant report

Variant	rs16925865
Chromosome Location	chr11:34633482-34633483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34632189..34634555-chr11:34662490..34665285,2	MCF-7	breast:
2	chr11:34630414..34634068-chr11:34634518..34638275,4	K562	blood:
3	chr11:34626946..34629692-chr11:34630243..34633645,4	MCF-7	breast:
4	chr11:34631109..34633523-chr11:34830130..34832941,2	K562	blood:

Variant related genes	Relation type
ENSG00000135373	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10836262	0.82[ASN][1000 genomes]
rs10836263	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10836264	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11032780	0.88[ASN][1000 genomes]
rs16925853	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16925867	0.88[CEU][hapmap]
rs286930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs286932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286933	0.90[ASN][1000 genomes]
rs286934	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs286936	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs286937	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs286938	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs286940	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs286941	0.98[ASN][1000 genomes]
rs286943	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286944	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286947	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286948	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35933659	0.83[ASN][1000 genomes]
rs402709	0.82[ASN][1000 genomes]
rs57308521	0.91[ASN][1000 genomes]
rs7109197	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7952644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34624200-34633800	Weak transcription	Lung	lung
3	chr11:34625400-34642800	Weak transcription	Gastric	stomach
4	chr11:34628200-34635400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:34628400-34634600	Weak transcription	Esophagus	oesophagus
6	chr11:34628400-34638600	Weak transcription	Small Intestine	intestine
7	chr11:34628600-34637800	Weak transcription	Stomach Mucosa	stomach
8	chr11:34631200-34636200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:34631400-34635800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:34631600-34634200	Weak transcription	Fetal Heart	heart
11	chr11:34631600-34635400	Weak transcription	Fetal Intestine Small	intestine
12	chr11:34631800-34633800	Weak transcription	Pancreas	Pancrea
13	chr11:34631800-34634200	Weak transcription	HepG2	liver
14	chr11:34631800-34635600	Weak transcription	Fetal Intestine Large	intestine
15	chr11:34631800-34636000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:34632000-34634600	Weak transcription	A549	lung
17	chr11:34632000-34636200	Weak transcription	K562	blood

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