Variant report

Variant	rs286933
Chromosome Location	chr11:34630309-34630310
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34626946..34629692-chr11:34630243..34633645,4	MCF-7	breast:
2	chr11:34623436..34625468-chr11:34629882..34632091,2	MCF-7	breast:
3	chr11:34621491..34624249-chr11:34628284..34630730,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10836262	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836263	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836264	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032780	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16925853	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16925865	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs16925867	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs286930	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286932	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs286936	0.83[ASN][1000 genomes]
rs286937	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286938	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286940	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286941	0.92[ASN][1000 genomes]
rs286943	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286944	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286947	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs286948	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57308521	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7109197	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7952644	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv526845	chr11:34625239-34632772	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34623400-34631200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:34624200-34633800	Weak transcription	Lung	lung
4	chr11:34624800-34630800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:34625400-34642800	Weak transcription	Gastric	stomach
6	chr11:34627400-34631600	Weak transcription	HSMMtube	muscle
7	chr11:34627800-34631400	Weak transcription	Pancreas	Pancrea
8	chr11:34628200-34631000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:34628200-34631000	Weak transcription	NHEK	skin
10	chr11:34628200-34635400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:34628400-34630600	Weak transcription	Hela-S3	cervix
12	chr11:34628400-34631000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:34628400-34631000	Weak transcription	Fetal Intestine Small	intestine
14	chr11:34628400-34631200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:34628400-34631200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:34628400-34631400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:34628400-34631600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:34628400-34634600	Weak transcription	Esophagus	oesophagus
19	chr11:34628400-34638600	Weak transcription	Small Intestine	intestine
20	chr11:34628600-34630600	Weak transcription	A549	lung
21	chr11:34628600-34631400	Weak transcription	Fetal Intestine Large	intestine
22	chr11:34628600-34637800	Weak transcription	Stomach Mucosa	stomach
23	chr11:34630000-34631800	Enhancers	HepG2	liver
24	chr11:34630200-34631000	Enhancers	K562	blood

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