Variant report

Variant	rs286932
Chromosome Location	chr11:34631201-34631202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34619511..34621145-chr11:34630606..34632621,2	K562	blood:
2	chr11:34630477..34632463-chr11:34633814..34636376,2	K562	blood:
3	chr11:34621233..34623041-chr11:34631125..34633370,2	K562	blood:
4	chr11:34630414..34634068-chr11:34634518..34638275,4	K562	blood:
5	chr11:34621045..34623041-chr11:34631011..34633370,3	K562	blood:
6	chr11:34630893..34631873-chr5:149379885..149380801,2	NB4	blood:
7	chr11:34626946..34629692-chr11:34630243..34633645,4	MCF-7	breast:
8	chr11:34623436..34625468-chr11:34629882..34632091,2	MCF-7	breast:
9	chr11:34631109..34633523-chr11:34830130..34832941,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000113716	Chromatin interaction
ENSG00000164296	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10836262	0.81[EUR][1000 genomes]
rs10836263	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10836264	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11032780	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16925853	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16925865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16925867	0.87[CEU][hapmap]
rs286930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286933	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs286934	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs286936	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs286937	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286938	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286940	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286941	0.95[ASN][1000 genomes]
rs286943	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286944	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286947	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs286948	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35933659	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57308521	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7109197	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7952644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv526845	chr11:34625239-34632772	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34624200-34633800	Weak transcription	Lung	lung
3	chr11:34625400-34642800	Weak transcription	Gastric	stomach
4	chr11:34627400-34631600	Weak transcription	HSMMtube	muscle
5	chr11:34627800-34631400	Weak transcription	Pancreas	Pancrea
6	chr11:34628200-34635400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:34628400-34631400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:34628400-34631600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:34628400-34634600	Weak transcription	Esophagus	oesophagus
10	chr11:34628400-34638600	Weak transcription	Small Intestine	intestine
11	chr11:34628600-34631400	Weak transcription	Fetal Intestine Large	intestine
12	chr11:34628600-34637800	Weak transcription	Stomach Mucosa	stomach
13	chr11:34630000-34631800	Enhancers	HepG2	liver
14	chr11:34630400-34631400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr11:34630600-34631400	Enhancers	Hela-S3	cervix
16	chr11:34630600-34632000	Enhancers	A549	lung
17	chr11:34630800-34631600	Enhancers	Fetal Heart	heart
18	chr11:34630800-34632200	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr11:34631000-34631400	Flanking Active TSS	K562	blood
20	chr11:34631000-34631600	Enhancers	Fetal Intestine Small	intestine
21	chr11:34631000-34631800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:34631000-34631800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:34631000-34632200	Enhancers	NHEK	skin
24	chr11:34631200-34631600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:34631200-34631800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:34631200-34631800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:34631200-34636200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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