Variant report

Variant	rs286936
Chromosome Location	chr11:34629654-34629655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34626946..34629692-chr11:34630243..34633645,4	MCF-7	breast:
2	chr11:34621491..34624249-chr11:34628284..34630730,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10836263	0.83[ASN][1000 genomes]
rs10836264	0.83[ASN][1000 genomes]
rs11032780	0.81[ASN][1000 genomes]
rs16925853	0.82[ASN][1000 genomes]
rs16925865	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs286930	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs286932	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs286933	0.83[ASN][1000 genomes]
rs286934	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286937	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs286938	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs286940	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs286941	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs286943	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs286944	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs286947	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs286948	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35933659	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs402709	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57308521	0.83[ASN][1000 genomes]
rs7109197	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7952644	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv526845	chr11:34625239-34632772	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34623400-34631200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:34624200-34633800	Weak transcription	Lung	lung
4	chr11:34624800-34630800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:34625400-34642800	Weak transcription	Gastric	stomach
6	chr11:34627400-34631600	Weak transcription	HSMMtube	muscle
7	chr11:34627800-34631400	Weak transcription	Pancreas	Pancrea
8	chr11:34628200-34630200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:34628200-34631000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:34628200-34631000	Weak transcription	NHEK	skin
11	chr11:34628200-34635400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:34628400-34630200	Weak transcription	K562	blood
13	chr11:34628400-34630600	Weak transcription	Hela-S3	cervix
14	chr11:34628400-34631000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:34628400-34631000	Weak transcription	Fetal Intestine Small	intestine
16	chr11:34628400-34631200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:34628400-34631200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:34628400-34631400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:34628400-34631600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:34628400-34634600	Weak transcription	Esophagus	oesophagus
21	chr11:34628400-34638600	Weak transcription	Small Intestine	intestine
22	chr11:34628600-34630000	Weak transcription	HepG2	liver
23	chr11:34628600-34630600	Weak transcription	A549	lung
24	chr11:34628600-34631400	Weak transcription	Fetal Intestine Large	intestine
25	chr11:34628600-34637800	Weak transcription	Stomach Mucosa	stomach

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