Variant report

Variant	rs10840234
Chromosome Location	chr11:9429407-9429408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr11:9429287-9429419	K562	blood:	n/a	n/a
2	NFYA	chr11:9429321-9429511	GM12878	blood:	n/a	n/a
3	POLR2A	chr11:9429395-9429852	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9427119..9429993-chr11:9435420..9437551,3	K562	blood:

Variant related genes	Relation type
IPO7	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1020621	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1020622	0.86[ASN][1000 genomes]
rs10743107	0.96[ASN][1000 genomes]
rs10770028	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs10770029	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10770032	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs10770033	0.86[ASN][1000 genomes]
rs10840228	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs10840235	0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs10840236	0.94[ASN][1000 genomes]
rs10840237	0.88[ASN][1000 genomes]
rs10840238	0.87[ASN][1000 genomes]
rs10840243	0.89[JPT][hapmap]
rs10840245	0.89[JPT][hapmap]
rs11042328	1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs11042329	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042348	0.90[ASN][1000 genomes]
rs11042349	0.84[ASN][1000 genomes]
rs11042350	0.87[ASN][1000 genomes]
rs11042353	0.86[ASN][1000 genomes]
rs11042355	0.86[ASN][1000 genomes]
rs11042356	0.86[ASN][1000 genomes]
rs11042366	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs11042395	0.90[JPT][hapmap]
rs11826606	0.81[ASN][1000 genomes]
rs12225755	0.91[ASN][1000 genomes]
rs12271897	0.87[ASN][1000 genomes]
rs12282176	0.86[ASN][1000 genomes]
rs12296039	0.83[ASN][1000 genomes]
rs12795344	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs12797567	0.90[ASN][1000 genomes]
rs12799672	0.83[ASN][1000 genomes]
rs12800802	0.87[ASN][1000 genomes]
rs2278900	0.89[JPT][hapmap]
rs2290423	0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs2290424	0.89[JPT][hapmap]
rs2290425	0.89[JPT][hapmap]
rs35781320	0.84[ASN][1000 genomes]
rs41369549	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4625466	0.83[JPT][hapmap]
rs4810	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4910053	0.90[JPT][hapmap]
rs6486306	0.93[ASN][1000 genomes]
rs6486307	1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs6486359	0.86[ASN][1000 genomes]
rs6486361	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs6486394	0.89[JPT][hapmap]
rs67548305	0.86[ASN][1000 genomes]
rs68060819	0.87[ASN][1000 genomes]
rs7104568	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs7114824	0.94[ASN][1000 genomes]
rs7122252	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs723297	0.89[JPT][hapmap]
rs727405	0.89[JPT][hapmap]
rs729313	0.89[JPT][hapmap]
rs7395411	0.84[ASN][1000 genomes]
rs7396544	0.85[ASN][1000 genomes]
rs7926589	0.89[JPT][hapmap]
rs7927350	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs7944578	0.93[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs7949973	0.86[ASN][1000 genomes]
rs8785	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs972594	0.89[JPT][hapmap]
rs9787851	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9407200-9430400	Weak transcription	Spleen	Spleen
2	chr11:9407200-9430600	Weak transcription	Esophagus	oesophagus
3	chr11:9407200-9430600	Weak transcription	Pancreas	Pancrea
4	chr11:9407200-9430800	Weak transcription	Gastric	stomach
5	chr11:9407600-9431400	Weak transcription	HSMMtube	muscle
6	chr11:9407600-9442000	Weak transcription	Fetal Brain Male	brain
7	chr11:9407600-9464000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:9408200-9431000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:9408800-9431200	Weak transcription	Brain Substantia Nigra	brain
10	chr11:9415800-9430000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:9416000-9456000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:9418000-9430400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:9418200-9432200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:9419200-9446600	Weak transcription	Small Intestine	intestine
15	chr11:9419600-9429800	Weak transcription	Fetal Heart	heart
16	chr11:9419600-9430800	Weak transcription	Brain Angular Gyrus	brain
17	chr11:9419600-9432400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:9419600-9471000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:9419800-9430600	Weak transcription	Ovary	ovary
20	chr11:9419800-9430800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:9419800-9431200	Weak transcription	Brain Anterior Caudate	brain
22	chr11:9419800-9431600	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:9419800-9444200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:9420000-9430400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:9420000-9430800	Weak transcription	Primary B cells from cord blood	blood
26	chr11:9420000-9432000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:9420000-9440200	Weak transcription	Fetal Kidney	kidney
28	chr11:9420200-9431000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:9420200-9432200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:9420400-9432200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:9420600-9430600	Weak transcription	Aorta	Aorta
32	chr11:9420600-9430800	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:9420600-9442000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:9420600-9450400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:9421000-9471200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:9421600-9430400	Weak transcription	Fetal Lung	lung
37	chr11:9421600-9436400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:9421800-9430800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:9423000-9470400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:9424000-9430600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:9424200-9470400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:9424800-9437800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:9424800-9438200	Strong transcription	Fetal Thymus	thymus
44	chr11:9424800-9438200	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr11:9424800-9468600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr11:9424800-9469000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:9424800-9470600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:9425000-9434000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:9425000-9468200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:9425000-9468400	Strong transcription	H1 Cell Line	embryonic stem cell

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