Variant report

Variant	rs10770032
Chromosome Location	chr11:9432316-9432317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9429811..9433973-chr11:9481355..9484368,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166478	Chromatin interaction
ENSG00000268403	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1020621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[ASN][1000 genomes]
rs1020622	0.90[ASN][1000 genomes]
rs10437665	0.81[JPT][hapmap]
rs10743107	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10770026	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10770028	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10770029	0.98[ASN][1000 genomes]
rs10770033	0.90[ASN][1000 genomes]
rs10840228	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.99[ASN][1000 genomes]
rs10840229	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10840234	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs10840235	0.90[CEU][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840236	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840237	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840238	0.91[ASN][1000 genomes]
rs10840243	0.95[JPT][hapmap]
rs10840245	0.95[JPT][hapmap]
rs10840253	0.86[JPT][hapmap]
rs11042328	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042329	1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs11042348	0.94[ASN][1000 genomes]
rs11042349	0.88[ASN][1000 genomes]
rs11042350	0.82[GIH][hapmap];0.91[ASN][1000 genomes]
rs11042353	0.90[ASN][1000 genomes]
rs11042355	0.90[ASN][1000 genomes]
rs11042356	0.90[ASN][1000 genomes]
rs11042366	0.94[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11042395	0.95[JPT][hapmap]
rs11826606	0.85[ASN][1000 genomes]
rs12225755	0.94[ASN][1000 genomes]
rs12271897	0.91[ASN][1000 genomes]
rs12282176	0.90[ASN][1000 genomes]
rs12296039	0.87[ASN][1000 genomes]
rs12790938	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12795344	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12797567	0.94[ASN][1000 genomes]
rs12799672	0.87[ASN][1000 genomes]
rs12800802	0.91[ASN][1000 genomes]
rs2278900	0.95[JPT][hapmap]
rs2290423	0.88[ASW][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2290424	0.95[JPT][hapmap]
rs2290425	0.95[JPT][hapmap]
rs35781320	0.87[ASN][1000 genomes]
rs41369549	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4625466	0.83[CHD][hapmap];0.95[JPT][hapmap]
rs4810	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4910048	0.81[JPT][hapmap]
rs4910053	0.95[JPT][hapmap]
rs6486306	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6486307	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6486359	0.90[ASN][1000 genomes]
rs6486361	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6486394	0.95[JPT][hapmap]
rs67548305	0.90[ASN][1000 genomes]
rs68060819	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7103931	0.81[ASN][1000 genomes]
rs7104568	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7114824	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7115477	0.91[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7122252	1.00[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7128033	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs723297	0.95[JPT][hapmap]
rs727405	0.95[JPT][hapmap]
rs729313	0.95[JPT][hapmap]
rs7395411	0.88[ASN][1000 genomes]
rs7396544	0.87[ASN][1000 genomes]
rs7480643	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7926589	0.95[JPT][hapmap]
rs7927350	0.88[ASW][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.96[YRI][hapmap]
rs7932192	0.80[ASN][1000 genomes]
rs7944435	0.81[ASN][1000 genomes]
rs7944578	0.94[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7949973	0.90[ASN][1000 genomes]
rs8785	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9667574	0.82[ASN][1000 genomes]
rs972594	0.95[JPT][hapmap]
rs9787851	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10770032	TEAD1	cis	cerebellum	SCAN
rs10770032	IPO7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9407600-9442000	Weak transcription	Fetal Brain Male	brain
2	chr11:9407600-9464000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:9416000-9456000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:9419200-9446600	Weak transcription	Small Intestine	intestine
5	chr11:9419600-9432400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:9419600-9471000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:9419800-9444200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:9420000-9440200	Weak transcription	Fetal Kidney	kidney
9	chr11:9420600-9442000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:9420600-9450400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:9421000-9471200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:9421600-9436400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:9423000-9470400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:9424200-9470400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:9424800-9437800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:9424800-9438200	Strong transcription	Fetal Thymus	thymus
17	chr11:9424800-9438200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:9424800-9468600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:9424800-9469000	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:9424800-9470600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:9425000-9434000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:9425000-9468200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:9425000-9468400	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr11:9425200-9467200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:9425400-9438800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:9425600-9446800	Weak transcription	Colonic Mucosa	Colon
27	chr11:9425800-9468000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:9426200-9471600	Strong transcription	Dnd41	blood
29	chr11:9426400-9443000	Strong transcription	Hela-S3	cervix
30	chr11:9426800-9437800	Strong transcription	HepG2	liver
31	chr11:9426800-9468400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr11:9426800-9470600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:9427000-9433200	Strong transcription	HSMM	muscle
34	chr11:9427000-9433400	Strong transcription	Osteobl	bone
35	chr11:9427200-9466800	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:9427600-9471000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:9428200-9433400	Strong transcription	HMEC	breast
38	chr11:9428800-9435800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:9429400-9433800	Strong transcription	K562	blood
40	chr11:9429600-9433400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:9429800-9433200	Strong transcription	GM12878-XiMat	blood
42	chr11:9429800-9433600	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr11:9429800-9434200	Strong transcription	Liver	Liver
44	chr11:9429800-9437600	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr11:9429800-9443000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr11:9429800-9469000	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:9430000-9433600	Strong transcription	Primary hematopoietic stem cells	blood
48	chr11:9430000-9433600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:9430000-9434000	Strong transcription	NHEK	skin
50	chr11:9430000-9438800	Strong transcription	Placenta	Placenta

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