Variant report

Variant	rs68060819
Chromosome Location	chr11:9412676-9412677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9408886..9410553-chr11:9412178..9413968,2	MCF-7	breast:
2	chr11:9405514..9407674-chr11:9408995..9413287,4	MCF-7	breast:
3	chr11:9224063..9226510-chr11:9410318..9412693,2	K562	blood:
4	chr11:9334119..9338283-chr11:9409615..9419892,10	K562	blood:

Variant related genes	Relation type
ENSG00000205339	Chromatin interaction
ENSG00000166471	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1020621	0.82[ASN][1000 genomes]
rs1020622	0.82[ASN][1000 genomes]
rs10743107	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10770026	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10770028	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10770029	0.89[ASN][1000 genomes]
rs10770032	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10770033	0.82[ASN][1000 genomes]
rs10840228	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10840229	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10840234	0.87[ASN][1000 genomes]
rs10840235	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10840236	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10840237	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840238	0.83[ASN][1000 genomes]
rs11042328	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042329	0.90[ASN][1000 genomes]
rs11042348	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11042350	0.83[ASN][1000 genomes]
rs11042353	0.82[ASN][1000 genomes]
rs11042355	0.82[ASN][1000 genomes]
rs11042356	0.82[ASN][1000 genomes]
rs12225755	0.85[ASN][1000 genomes]
rs12271897	0.83[ASN][1000 genomes]
rs12282176	0.82[ASN][1000 genomes]
rs12790938	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12795344	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12797567	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12800802	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12801513	0.80[AMR][1000 genomes]
rs41369549	0.82[ASN][1000 genomes]
rs4810	0.82[ASN][1000 genomes]
rs6486306	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6486307	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6486359	0.82[ASN][1000 genomes]
rs6486361	0.82[ASN][1000 genomes]
rs67548305	0.82[ASN][1000 genomes]
rs7104568	0.82[ASN][1000 genomes]
rs7114824	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7115477	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7122252	0.83[ASN][1000 genomes]
rs7128033	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7396544	0.86[AMR][1000 genomes]
rs7480643	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7949973	0.82[ASN][1000 genomes]
rs8785	0.82[ASN][1000 genomes]
rs9787851	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9407200-9425400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:9407200-9427000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:9407200-9430400	Weak transcription	Spleen	Spleen
4	chr11:9407200-9430600	Weak transcription	Esophagus	oesophagus
5	chr11:9407200-9430600	Weak transcription	Pancreas	Pancrea
6	chr11:9407200-9430800	Weak transcription	Gastric	stomach
7	chr11:9407400-9414200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:9407400-9414200	Weak transcription	Thymus	Thymus
9	chr11:9407400-9427000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:9407400-9427000	Weak transcription	Left Ventricle	heart
11	chr11:9407600-9413400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:9407600-9431400	Weak transcription	HSMMtube	muscle
13	chr11:9407600-9442000	Weak transcription	Fetal Brain Male	brain
14	chr11:9407600-9464000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:9407800-9412800	Weak transcription	Right Atrium	heart
16	chr11:9407800-9413400	Weak transcription	Fetal Intestine Large	intestine
17	chr11:9407800-9417000	Weak transcription	Placenta	Placenta
18	chr11:9407800-9417400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:9407800-9425400	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:9407800-9427000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:9408000-9413400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:9408000-9419000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:9408000-9419200	Weak transcription	Fetal Lung	lung
24	chr11:9408000-9419800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:9408000-9424800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:9408200-9418000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:9408200-9419600	Weak transcription	Primary B cells from cord blood	blood
28	chr11:9408200-9431000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:9408400-9413400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:9408400-9419000	Weak transcription	Brain Anterior Caudate	brain
31	chr11:9408400-9419200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:9408400-9428400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:9408600-9413600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:9408600-9419400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr11:9408800-9413400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr11:9408800-9426400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:9408800-9427000	Weak transcription	Fetal Brain Female	brain
38	chr11:9408800-9431200	Weak transcription	Brain Substantia Nigra	brain
39	chr11:9409000-9413400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:9409000-9413400	Weak transcription	Primary T cells from cord blood	blood
41	chr11:9409000-9413400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:9409000-9413400	Weak transcription	Osteobl	bone
43	chr11:9409000-9414000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:9409000-9414200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:9409000-9414800	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:9409000-9415200	Strong transcription	Fetal Intestine Small	intestine
47	chr11:9409000-9417200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:9409000-9418000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:9409000-9418000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:9409000-9418400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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