Variant report

Variant	rs10840259
Chromosome Location	chr11:9578173-9578174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9577852..9580847-chr11:9583001..9585793,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10840287	1.00[YRI][hapmap]
rs11042411	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs11042440	1.00[YRI][hapmap]
rs11042441	1.00[YRI][hapmap]
rs11042466	1.00[YRI][hapmap]
rs11600183	1.00[YRI][hapmap]
rs7120616	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv971928	chr11:9561378-9586236	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9547800-9586600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:9549400-9581000	Weak transcription	Primary B cells from cord blood	blood
3	chr11:9549800-9578200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:9550600-9586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:9551000-9581200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:9551400-9582600	Weak transcription	Primary T cells from cord blood	blood
7	chr11:9557200-9579000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:9557400-9584400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:9565000-9580600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:9566400-9587400	Weak transcription	Psoas Muscle	Psoas
11	chr11:9569600-9584400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:9570800-9580600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr11:9573600-9582400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:9573600-9584200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:9573800-9579800	Weak transcription	Fetal Intestine Small	intestine
16	chr11:9573800-9584800	Weak transcription	Left Ventricle	heart
17	chr11:9573800-9585000	Weak transcription	Lung	lung
18	chr11:9573800-9586000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:9573800-9586600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:9573800-9586600	Weak transcription	Pancreas	Pancrea
21	chr11:9573800-9587800	Weak transcription	Gastric	stomach
22	chr11:9574000-9579000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:9575800-9578200	Weak transcription	K562	blood
24	chr11:9577000-9584400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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