Variant report

Variant	rs1084386
Chromosome Location	chr6:71406568-71406569
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10447360	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1084382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1084385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945228	1.00[ASN][1000 genomes]
rs13207234	1.00[ASN][1000 genomes]
rs1413353	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17763641	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2347624	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2460694	1.00[ASN][1000 genomes]
rs2504742	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2504746	1.00[ASN][1000 genomes]
rs4235862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455376	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6455381	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740106	1.00[ASN][1000 genomes]
rs7750570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs782003	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294880	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446297	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997350	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71383000-71410400	Weak transcription	Gastric	stomach
2	chr6:71384600-71408800	Weak transcription	Pancreas	Pancrea
3	chr6:71390400-71410000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:71395800-71417400	Weak transcription	Small Intestine	intestine
5	chr6:71396200-71409000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:71396400-71408800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:71396400-71410600	Weak transcription	Fetal Heart	heart
8	chr6:71396800-71410400	Weak transcription	Liver	Liver
9	chr6:71396800-71411000	Weak transcription	Adipose Nuclei	Adipose
10	chr6:71398400-71414400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:71398800-71411000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:71400800-71411000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:71401800-71409200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:71403200-71406600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:71403400-71409000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:71403400-71412400	Weak transcription	Fetal Thymus	thymus
17	chr6:71403600-71408600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:71403800-71408000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:71403800-71409000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:71403800-71411200	Weak transcription	Dnd41	blood
21	chr6:71404000-71406800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr6:71404000-71408800	Weak transcription	Left Ventricle	heart
23	chr6:71404000-71409000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:71404000-71409000	Weak transcription	Thymus	Thymus
25	chr6:71404000-71409200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:71404000-71410600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:71404000-71410800	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:71404200-71410800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:71404400-71408600	Weak transcription	Psoas Muscle	Psoas
30	chr6:71404400-71408600	Weak transcription	Right Ventricle	heart
31	chr6:71404400-71408800	Weak transcription	Aorta	Aorta
32	chr6:71404400-71408800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:71404400-71417600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:71404600-71408800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:71404600-71410400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:71404600-71417400	Weak transcription	GM12878-XiMat	blood
37	chr6:71404800-71409000	Weak transcription	Ovary	ovary
38	chr6:71405200-71406800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:71405400-71410600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:71405600-71408800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:71405600-71409000	Weak transcription	Colonic Mucosa	Colon
42	chr6:71405600-71409000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr6:71405600-71417600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:71405800-71417400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:71406000-71409000	Weak transcription	Brain Anterior Caudate	brain
46	chr6:71406400-71409000	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links