Variant report

Variant	rs7740106
Chromosome Location	chr6:71412102-71412103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10447360	1.00[ASN][1000 genomes]
rs1084382	1.00[ASN][1000 genomes]
rs1084385	1.00[ASN][1000 genomes]
rs1084386	1.00[ASN][1000 genomes]
rs10945228	1.00[ASN][1000 genomes]
rs13207234	1.00[ASN][1000 genomes]
rs1413353	1.00[ASN][1000 genomes]
rs17763641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460694	1.00[ASN][1000 genomes]
rs2504742	1.00[ASN][1000 genomes]
rs2504746	1.00[ASN][1000 genomes]
rs4235862	1.00[ASN][1000 genomes]
rs6455381	1.00[ASN][1000 genomes]
rs7750570	1.00[ASN][1000 genomes]
rs782003	1.00[ASN][1000 genomes]
rs9294880	1.00[ASN][1000 genomes]
rs9346399	1.00[ASN][1000 genomes]
rs9446297	1.00[ASN][1000 genomes]
rs997350	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71395800-71417400	Weak transcription	Small Intestine	intestine
2	chr6:71398400-71414400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:71403400-71412400	Weak transcription	Fetal Thymus	thymus
4	chr6:71404400-71417600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:71404600-71417400	Weak transcription	GM12878-XiMat	blood
6	chr6:71405600-71417600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:71405800-71417400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:71407200-71414400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:71407400-71419200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:71407400-71419400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:71407800-71419000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:71407800-71419600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:71408000-71417600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:71408200-71420200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:71408400-71418000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:71408800-71413400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:71408800-71417600	Weak transcription	Stomach Mucosa	stomach
18	chr6:71409000-71416000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:71409200-71412600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:71409600-71412200	Weak transcription	Colonic Mucosa	Colon
21	chr6:71409600-71412400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:71409600-71414400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:71409600-71415200	Weak transcription	Aorta	Aorta
24	chr6:71409600-71419400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr6:71409800-71414400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:71409800-71421600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:71409800-71422600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:71410000-71415000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:71410000-71417800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:71410600-71413200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:71410800-71412400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:71410800-71414200	Weak transcription	Thymus	Thymus
33	chr6:71410800-71417600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:71411000-71412600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:71411000-71412600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:71411200-71413400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:71411200-71413400	Weak transcription	Spleen	Spleen
38	chr6:71411200-71414600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:71411200-71414800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:71411200-71417600	Weak transcription	Primary T cells from cord blood	blood
41	chr6:71411200-71417800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:71411200-71421400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:71411400-71412800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr6:71411400-71412800	Weak transcription	Left Ventricle	heart
45	chr6:71411400-71413000	Weak transcription	Fetal Intestine Large	intestine
46	chr6:71411400-71413200	Weak transcription	Ovary	ovary
47	chr6:71411400-71414600	Weak transcription	Fetal Intestine Small	intestine
48	chr6:71411400-71414600	Weak transcription	Fetal Stomach	stomach
49	chr6:71411400-71415200	Weak transcription	Lung	lung
50	chr6:71411400-71415800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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