Variant report
| Variant | rs2460694 |
|---|---|
| Chromosome Location | chr6:71601510-71601511 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10447360 | 1.00[ASN][1000 genomes] |
| rs1084382 | 1.00[ASN][1000 genomes] |
| rs1084385 | 1.00[ASN][1000 genomes] |
| rs1084386 | 1.00[ASN][1000 genomes] |
| rs1413353 | 1.00[ASN][1000 genomes] |
| rs17763641 | 1.00[ASN][1000 genomes] |
| rs2504742 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2504746 | 1.00[ASN][1000 genomes] |
| rs4235862 | 1.00[ASN][1000 genomes] |
| rs6455381 | 1.00[ASN][1000 genomes] |
| rs7740106 | 1.00[ASN][1000 genomes] |
| rs7750570 | 1.00[ASN][1000 genomes] |
| rs782003 | 1.00[ASN][1000 genomes] |
| rs9294880 | 1.00[ASN][1000 genomes] |
| rs9346399 | 1.00[ASN][1000 genomes] |
| rs9446297 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932111 | chr6:70736835-71633094 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv917312 | chr6:70961903-71601688 | Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 3 | nsv603639 | chr6:71595151-71623253 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:71596400-71602600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
