Variant report

Variant	rs2504746
Chromosome Location	chr6:71584709-71584710
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10447360	1.00[ASN][1000 genomes]
rs1084382	1.00[ASN][1000 genomes]
rs1084385	1.00[ASN][1000 genomes]
rs1084386	1.00[ASN][1000 genomes]
rs1413353	1.00[ASN][1000 genomes]
rs17763641	1.00[ASN][1000 genomes]
rs2460694	1.00[ASN][1000 genomes]
rs2504742	1.00[ASN][1000 genomes]
rs4235862	1.00[ASN][1000 genomes]
rs6455381	1.00[ASN][1000 genomes]
rs7740106	1.00[ASN][1000 genomes]
rs7750570	1.00[ASN][1000 genomes]
rs782003	1.00[ASN][1000 genomes]
rs9294880	1.00[ASN][1000 genomes]
rs9346399	1.00[ASN][1000 genomes]
rs9446297	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71584000-71584800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:71584000-71584800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:71584000-71585000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:71584000-71586000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:71584200-71584800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:71584400-71595800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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