Variant report

Variant	rs10844474
Chromosome Location	chr12:33269608-33269609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:33245520..33247527-chr12:33268044..33270867,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10047666	0.84[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10459093	0.89[ASN][1000 genomes]
rs10506104	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10772037	0.91[EUR][1000 genomes]
rs10772040	0.81[EUR][1000 genomes]
rs10844471	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844480	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10844491	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10844492	0.80[AMR][1000 genomes]
rs11052501	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11052502	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11052503	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11052526	0.89[EUR][1000 genomes]
rs12297690	0.84[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1392331	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1445311	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1961179	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1961180	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2120967	0.81[EUR][1000 genomes]
rs59547881	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72640193	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1044931	chr12:33179957-33307362	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1046565	chr12:33252166-33294648	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1035521	chr12:33265578-33293907	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33268000-33269800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:33268200-33269800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr12:33268200-33270400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:33268400-33269800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:33269000-33269800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:33269200-33269800	Enhancers	HMEC	breast
7	chr12:33269400-33270400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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