Variant report
Variant | rs1445311 |
---|---|
Chromosome Location | chr12:33279859-33279860 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10047666 | 0.86[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10459093 | 0.83[ASN][1000 genomes] |
rs10506104 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10772037 | 0.85[EUR][1000 genomes] |
rs10844471 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10844474 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10844480 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10844491 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10844492 | 0.87[ASN][1000 genomes] |
rs11052501 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs11052502 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs11052503 | 0.88[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs11052526 | 0.83[EUR][1000 genomes] |
rs12297690 | 0.86[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1392331 | 1.00[JPT][hapmap];0.89[EUR][1000 genomes] |
rs1961179 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1961180 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs59547881 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs72640193 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530421 | chr12:32825335-33465991 | Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
2 | nsv832367 | chr12:33063644-33298967 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv1044931 | chr12:33179957-33307362 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv1046565 | chr12:33252166-33294648 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv1035521 | chr12:33265578-33293907 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | esv1815763 | chr12:33271892-33306863 | Weak transcription ZNF genes & repeats Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:33277800-33280000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |