Variant report

Variant	rs11052526
Chromosome Location	chr12:33358964-33358965
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10047666	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10506104	0.83[EUR][1000 genomes]
rs10772037	0.81[EUR][1000 genomes]
rs10772040	0.85[AFR][1000 genomes]
rs10844471	0.89[EUR][1000 genomes]
rs10844474	0.89[EUR][1000 genomes]
rs10844480	0.83[EUR][1000 genomes]
rs10844491	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10844492	0.80[AFR][1000 genomes]
rs11052501	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs11052502	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs11052503	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12297690	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1392331	0.85[EUR][1000 genomes]
rs1445311	0.83[EUR][1000 genomes]
rs1961179	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1961180	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2120967	0.85[AFR][1000 genomes]
rs59547881	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72640193	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1037459	chr12:33310703-33905662	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv541459	chr12:33310703-33905662	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1054927	chr12:33325003-33379954	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3445417	chr12:33358734-33401031	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33358600-33359600	Enhancers	Colon Smooth Muscle	Colon
2	chr12:33358800-33359400	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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