Variant report

Variant	rs10846569
Chromosome Location	chr12:124374716-124374717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1022320	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1022321	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10744163	1.00[CHB][hapmap]
rs10846556	1.00[ASN][1000 genomes]
rs10846559	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11057355	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11057358	1.00[ASN][1000 genomes]
rs1114628	1.00[CHB][hapmap]
rs11832329	1.00[ASN][1000 genomes]
rs11835233	1.00[ASN][1000 genomes]
rs11835252	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1568027	1.00[ASN][1000 genomes]
rs1568029	1.00[ASN][1000 genomes]
rs1568030	1.00[CHB][hapmap]
rs2340692	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2674504	1.00[ASN][1000 genomes]
rs2674506	1.00[ASN][1000 genomes]
rs34506612	1.00[ASN][1000 genomes]
rs34535130	1.00[ASN][1000 genomes]
rs34705855	1.00[ASN][1000 genomes]
rs4930728	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4930732	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs56399357	1.00[ASN][1000 genomes]
rs61953572	1.00[ASN][1000 genomes]
rs67861770	1.00[ASN][1000 genomes]
rs7136121	1.00[ASN][1000 genomes]
rs7137299	1.00[ASN][1000 genomes]
rs7137310	1.00[ASN][1000 genomes]
rs71458816	1.00[ASN][1000 genomes]
rs7303002	1.00[ASN][1000 genomes]
rs7973103	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv1811815	chr12:124374716-124424636	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv1832870	chr12:124374716-124424636	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10846569	OGFOD2	cis	cerebellum	SCAN
rs10846569	C12orf65	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124371800-124375000	Weak transcription	Fetal Thymus	thymus
2	chr12:124373200-124377000	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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