Variant report
| Variant | rs1568029 |
|---|---|
| Chromosome Location | chr12:124275151-124275152 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1022320 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1022321 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10846556 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10846559 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10846569 | 1.00[ASN][1000 genomes] |
| rs11057355 | 1.00[ASN][1000 genomes] |
| rs11057358 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11832329 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11835233 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11835252 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1568027 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2340692 | 1.00[ASN][1000 genomes] |
| rs2674504 | 1.00[ASN][1000 genomes] |
| rs2674506 | 1.00[ASN][1000 genomes] |
| rs34506612 | 1.00[ASN][1000 genomes] |
| rs34535130 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34705855 | 1.00[ASN][1000 genomes] |
| rs4930728 | 1.00[ASN][1000 genomes] |
| rs4930732 | 1.00[ASN][1000 genomes] |
| rs55920625 | 1.00[ASN][1000 genomes] |
| rs56399357 | 1.00[ASN][1000 genomes] |
| rs61953572 | 1.00[ASN][1000 genomes] |
| rs67861770 | 1.00[ASN][1000 genomes] |
| rs7136121 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7137299 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7137310 | 1.00[ASN][1000 genomes] |
| rs71458816 | 1.00[ASN][1000 genomes] |
| rs7303002 | 1.00[ASN][1000 genomes] |
| rs7973103 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498024 | chr12:123994372-124459856 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:124265800-124275200 | Weak transcription | Fetal Brain Female | brain |
