Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr12:124262620-124262770	K562	blood:	n/a	n/a
2	CTCF	chr12:124262580-124262730	HBMEC	blood vessel:	n/a	n/a
3	CTCF	chr12:124262580-124262730	GM12865	blood:	n/a	n/a

Variant related genes	Relation type
DNAH10	TF binding region

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1022320	1.00[ASN][1000 genomes]
rs1022321	1.00[ASN][1000 genomes]
rs10846554	0.84[EUR][1000 genomes]
rs10846556	1.00[ASN][1000 genomes]
rs10846557	0.83[EUR][1000 genomes]
rs10846558	0.83[EUR][1000 genomes]
rs10846559	1.00[ASN][1000 genomes]
rs10846569	1.00[ASN][1000 genomes]
rs11057352	0.84[EUR][1000 genomes]
rs11057355	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11057357	0.83[EUR][1000 genomes]
rs11057358	1.00[ASN][1000 genomes]
rs11057359	0.82[EUR][1000 genomes]
rs11832329	1.00[ASN][1000 genomes]
rs11835233	1.00[ASN][1000 genomes]
rs11835252	1.00[ASN][1000 genomes]
rs1568027	1.00[ASN][1000 genomes]
rs1568028	0.82[EUR][1000 genomes]
rs1568029	1.00[ASN][1000 genomes]
rs2340692	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2674504	1.00[ASN][1000 genomes]
rs2674506	1.00[ASN][1000 genomes]
rs34224739	1.00[ASN][1000 genomes]
rs34506612	1.00[ASN][1000 genomes]
rs34535130	1.00[ASN][1000 genomes]
rs34705855	1.00[ASN][1000 genomes]
rs4930728	1.00[ASN][1000 genomes]
rs4930732	1.00[ASN][1000 genomes]
rs55920625	1.00[ASN][1000 genomes]
rs56399357	1.00[ASN][1000 genomes]
rs61953572	1.00[ASN][1000 genomes]
rs67861770	1.00[ASN][1000 genomes]
rs7131750	0.84[EUR][1000 genomes]
rs7136121	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7137299	1.00[ASN][1000 genomes]
rs71458816	1.00[ASN][1000 genomes]
rs7303002	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7973103	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124255600-124270800	Weak transcription	Brain Anterior Caudate	brain

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