Variant report
| Variant | rs11057359 |
|---|---|
| Chromosome Location | chr12:124274781-124274782 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10846554 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10846557 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10846558 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11057352 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11057353 | 0.88[ASN][1000 genomes] |
| rs11057355 | 0.83[EUR][1000 genomes] |
| rs11057357 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11834698 | 0.82[ASN][1000 genomes] |
| rs12099921 | 0.97[ASN][1000 genomes] |
| rs1568028 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2340692 | 0.83[EUR][1000 genomes] |
| rs36085880 | 0.85[ASN][1000 genomes] |
| rs56759847 | 0.88[ASN][1000 genomes] |
| rs59341883 | 0.88[ASN][1000 genomes] |
| rs61143657 | 0.91[ASN][1000 genomes] |
| rs7131750 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7137310 | 0.82[EUR][1000 genomes] |
| rs7303002 | 0.83[EUR][1000 genomes] |
| rs7962448 | 0.91[ASN][1000 genomes] |
| rs7964186 | 0.88[ASN][1000 genomes] |
| rs7965847 | 0.91[ASN][1000 genomes] |
| rs7978454 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498024 | chr12:123994372-124459856 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:124265800-124275200 | Weak transcription | Fetal Brain Female | brain |
