Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1022320	0.83[EUR][1000 genomes]
rs1022321	0.84[EUR][1000 genomes]
rs10846556	0.82[EUR][1000 genomes]
rs10846557	0.94[ASN][1000 genomes]
rs10846558	0.94[ASN][1000 genomes]
rs10846559	0.84[EUR][1000 genomes]
rs11057352	0.82[ASN][1000 genomes]
rs11057353	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11057357	0.94[ASN][1000 genomes]
rs11057358	0.84[EUR][1000 genomes]
rs11057359	0.91[ASN][1000 genomes]
rs11832329	0.81[EUR][1000 genomes]
rs11835233	0.81[EUR][1000 genomes]
rs11835252	0.82[EUR][1000 genomes]
rs12099921	0.88[ASN][1000 genomes]
rs1568027	0.84[EUR][1000 genomes]
rs1568028	0.91[ASN][1000 genomes]
rs34535130	0.82[EUR][1000 genomes]
rs36085880	0.81[ASN][1000 genomes]
rs56759847	0.97[ASN][1000 genomes]
rs59341883	0.97[ASN][1000 genomes]
rs61143657	0.93[ASN][1000 genomes]
rs7131750	0.81[ASN][1000 genomes]
rs7136121	0.83[EUR][1000 genomes]
rs7137299	0.83[EUR][1000 genomes]
rs7965847	0.82[ASN][1000 genomes]
rs7978454	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3425998	chr12:124271205-124273928	Active TSS Bivalent/Poised TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124265800-124275200	Weak transcription	Fetal Brain Female	brain
2	chr12:124272000-124272200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:124272000-124273000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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