Variant report

Variant	rs59341883
Chromosome Location	chr12:124273108-124273109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10846557	0.91[ASN][1000 genomes]
rs10846558	0.91[ASN][1000 genomes]
rs11057353	0.93[ASN][1000 genomes]
rs11057357	0.91[ASN][1000 genomes]
rs11057359	0.88[ASN][1000 genomes]
rs11834698	0.81[ASN][1000 genomes]
rs12099921	0.91[ASN][1000 genomes]
rs1568028	0.88[ASN][1000 genomes]
rs36085880	0.84[ASN][1000 genomes]
rs56759847	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61143657	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7962448	0.97[ASN][1000 genomes]
rs7964186	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3425998	chr12:124271205-124273928	Active TSS Bivalent/Poised TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124265800-124275200	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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