Variant report

Variant	rs56759847
Chromosome Location	chr12:124270105-124270106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10846557	0.91[ASN][1000 genomes]
rs10846558	0.91[ASN][1000 genomes]
rs11057353	0.93[ASN][1000 genomes]
rs11057357	0.91[ASN][1000 genomes]
rs11057359	0.88[ASN][1000 genomes]
rs11834698	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12099921	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1568028	0.88[ASN][1000 genomes]
rs36085880	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59341883	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59367942	0.96[EUR][1000 genomes]
rs61143657	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7962448	0.97[ASN][1000 genomes]
rs7964053	0.92[EUR][1000 genomes]
rs7964186	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124255600-124270800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:124265800-124275200	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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