Variant report
| Variant | rs7964186 |
|---|---|
| Chromosome Location | chr12:124319101-124319102 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr12:124319064-124319297 | A549 | lung: | n/a | chr12:124319145-124319156 |
| 2 | CEBPB | chr12:124319057-124319282 | K562 | blood: | n/a | chr12:124319145-124319156 |
| 3 | CEBPB | chr12:124319011-124319299 | HepG2 | liver: | n/a | chr12:124319145-124319156 |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| DNAH10 | TF binding region |
| ENSG00000119242 | Chromatin interaction |
| ENSG00000178882 | Chromatin interaction |
| ENSG00000179195 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10773036 | 1.00[JPT][hapmap] |
| rs10846557 | 0.85[ASN][1000 genomes] |
| rs10846558 | 0.85[ASN][1000 genomes] |
| rs11057357 | 0.85[ASN][1000 genomes] |
| rs11057359 | 0.88[ASN][1000 genomes] |
| rs11834698 | 0.90[EUR][1000 genomes] |
| rs12099921 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12579670 | 0.82[JPT][hapmap] |
| rs12580590 | 0.82[JPT][hapmap] |
| rs12581508 | 0.82[JPT][hapmap] |
| rs12581919 | 1.00[CHB][hapmap] |
| rs1568028 | 0.88[ASN][1000 genomes] |
| rs36085880 | 0.90[EUR][1000 genomes] |
| rs4930730 | 1.00[CHD][hapmap] |
| rs56759847 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs59341883 | 0.81[ASN][1000 genomes] |
| rs61143657 | 0.84[ASN][1000 genomes] |
| rs7315108 | 0.82[JPT][hapmap] |
| rs7964053 | 0.89[EUR][1000 genomes] |
| rs7965847 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs7969937 | 0.82[JPT][hapmap] |
| rs7977449 | 0.82[JPT][hapmap] |
| rs7978454 | 1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs9888323 | 0.85[CHD][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498024 | chr12:123994372-124459856 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7964186 | ABCB9 | cis | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:124314600-124319400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
