Variant report
| Variant | rs61143657 |
|---|---|
| Chromosome Location | chr12:124286217-124286218 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:124286094..124286683-chr12:124412581..124413486,2 | MCF-7 | breast: | |
| 2 | chr12:124284685..124287409-chr12:124473083..124475024,2 | MCF-7 | breast: | |
| 3 | chr12:124283717..124287510-chr12:124455841..124459297,3 | MCF-7 | breast: | |
| 4 | chr12:124285925..124286799-chr12:124516900..124517700,4 | MCF-7 | breast: | |
| 5 | chr12:124285046..124286656-chr12:124466634..124468650,2 | MCF-7 | breast: | |
| 6 | chr12:124282815..124290244-chr12:124456214..124459436,8 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000119242 | Chromatin interaction |
| ENSG00000178882 | Chromatin interaction |
| ENSG00000179195 | Chromatin interaction |
| ENSG00000270095 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10846557 | 0.88[ASN][1000 genomes] |
| rs10846558 | 0.88[ASN][1000 genomes] |
| rs11057353 | 0.90[ASN][1000 genomes] |
| rs11057357 | 0.88[ASN][1000 genomes] |
| rs11057359 | 0.91[ASN][1000 genomes] |
| rs12099921 | 0.94[ASN][1000 genomes] |
| rs1568028 | 0.91[ASN][1000 genomes] |
| rs36085880 | 0.81[ASN][1000 genomes] |
| rs56759847 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs59341883 | 0.89[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs59367942 | 0.85[EUR][1000 genomes] |
| rs7962448 | 0.93[ASN][1000 genomes] |
| rs7964053 | 0.80[EUR][1000 genomes] |
| rs7964186 | 0.84[ASN][1000 genomes] |
| rs7965847 | 0.82[ASN][1000 genomes] |
| rs7978454 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498024 | chr12:123994372-124459856 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:124284200-124287800 | Weak transcription | Fetal Brain Male | brain |
