Variant report
| Variant | rs7303002 |
|---|---|
| Chromosome Location | chr12:124268458-124268459 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:124267933..124270211-chr12:124272777..124275350,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1022320 | 1.00[ASN][1000 genomes] |
| rs1022321 | 1.00[ASN][1000 genomes] |
| rs10846554 | 0.82[EUR][1000 genomes] |
| rs10846556 | 1.00[ASN][1000 genomes] |
| rs10846557 | 0.84[EUR][1000 genomes] |
| rs10846558 | 0.84[EUR][1000 genomes] |
| rs10846559 | 1.00[ASN][1000 genomes] |
| rs10846569 | 1.00[ASN][1000 genomes] |
| rs11057352 | 0.82[EUR][1000 genomes] |
| rs11057355 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11057357 | 0.84[EUR][1000 genomes] |
| rs11057358 | 1.00[ASN][1000 genomes] |
| rs11057359 | 0.83[EUR][1000 genomes] |
| rs11832329 | 1.00[ASN][1000 genomes] |
| rs11835233 | 1.00[ASN][1000 genomes] |
| rs11835252 | 1.00[ASN][1000 genomes] |
| rs1568027 | 1.00[ASN][1000 genomes] |
| rs1568028 | 0.83[EUR][1000 genomes] |
| rs1568029 | 1.00[ASN][1000 genomes] |
| rs2340692 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2674504 | 1.00[ASN][1000 genomes] |
| rs2674506 | 1.00[ASN][1000 genomes] |
| rs34506612 | 1.00[ASN][1000 genomes] |
| rs34535130 | 1.00[ASN][1000 genomes] |
| rs34705855 | 1.00[ASN][1000 genomes] |
| rs4930728 | 1.00[ASN][1000 genomes] |
| rs4930732 | 1.00[ASN][1000 genomes] |
| rs55920625 | 1.00[ASN][1000 genomes] |
| rs56399357 | 1.00[ASN][1000 genomes] |
| rs61953572 | 1.00[ASN][1000 genomes] |
| rs67861770 | 1.00[ASN][1000 genomes] |
| rs7131750 | 0.82[EUR][1000 genomes] |
| rs7136121 | 1.00[ASN][1000 genomes] |
| rs7137299 | 1.00[ASN][1000 genomes] |
| rs7137310 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71458816 | 1.00[ASN][1000 genomes] |
| rs7973103 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498024 | chr12:123994372-124459856 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:124255600-124270800 | Weak transcription | Brain Anterior Caudate | brain |
| 2 | chr12:124265800-124275200 | Weak transcription | Fetal Brain Female | brain |
| 3 | chr12:124266000-124269400 | Weak transcription | Fetal Brain Male | brain |
