Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10846587	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10846588	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10846594	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10846595	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10846596	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11057416	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11057417	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11057423	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11057424	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11057428	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11057431	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11057432	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11057435	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11057440	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11057444	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11057445	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11057446	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11057447	1.00[AFR][1000 genomes]
rs11057449	1.00[AFR][1000 genomes]
rs11611852	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12367007	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1402332	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs55835646	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124530600-124539000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:124534600-124538200	Weak transcription	Fetal Kidney	kidney
3	chr12:124534600-124538400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:124534600-124538400	Weak transcription	Stomach Mucosa	stomach
5	chr12:124534800-124538600	Weak transcription	Fetal Heart	heart
6	chr12:124536800-124538200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:124537200-124538400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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